Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00649 ATGAGTTGCTTTTCGTGCTTTGTTTCTCGTCGGAAAGACGTGAGGAGGGTTGAAATTGACAATGGCACTCGATCTGCTACTGCTACTACATCTTCATCAGAGGGTGAAAGGAAGAGAGAATCCTCAGAGGGGAAGGGGAAGAGTGTGAGCAATAGCAGTAGCAAAGGAAGTAGTACGGCAGCGGCTAGTTTTGGTTTTCGCGAACTGGCAGCGGCAACGAGGGGTTTCAAGGAGGTGAACTTAATTGGGGAAGGTGGTTTTGGAAGGGTTTACAAGGGTCGTCTTTCAACCGGCGAGCTTGTTGCCGTAAAGCAATTGAGTCATGATGGTCGGCAAGGTTTTCAGGAATTTGTGACGGAGGTTCTTATGTTGAGCCTGCTGCACCATTCCAATCTTGTCAAGTTAATTGGCTACTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAGTACATGCCCATGGGTTCACTCGAAGATCATCTATTTGATCCTATCCAAGACAAAGAACCCCTAAGTTGGAGTGCTCGAATGAAGATTGCTGTTGGAGCTGCTCGTGGCCTCGAATATCTCCATTGTAAAGCAGATCCACCTGTTATCTACAGAGACTTGAAATCTGCAAACATCTTATTAGATAATGAATTCAACCCAAAACTGTCAGATTTTGGGCTTGCTAAACTTGGACCTGTTGGAGACAATACCCATGTTTCAACTAGAGTGATGGGAACATATGGCTACTGTGCGCCAGAGTATGCCATGAGTGGCAAATTAACTCTTAAATCTGATATCTATAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGACGTAGAGCAATAGATGCCAGTAGAAAACCAGGAGAGCAAAACTTGGTTTCATGGTCTCGTCCATTTTTCAGTGACCGGAGAAAGTTTGTACAAATGGTTGACCCTCTATTACAAGGAAACTTCCCCTTGCGCTGTTTGCATCAGGCAATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCGAAATTCCGTCCACTTATTGGTGATATAGTTGTTGCACTGGAATACCTAGCTTCTCAGAGTATCCCTGAAGTCCATAGACATGGTGGGCGCAGCTCACCACAACAACCATCTTCAGAAATGGACAGAAATTAA 1140 0.4482 MSCFSCFVSRRKDVRRVEIDNGTRSATATTSSSEGERKRESSEGKGKSVSNSSSKGSSTAAASFGFRELAAATRGFKEVNLIGEGGFGRVYKGRLSTGELVAVKQLSHDGRQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDPIQDKEPLSWSARMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDASRKPGEQNLVSWSRPFFSDRRKFVQMVDPLLQGNFPLRCLHQAIAITAMCLQEQPKFRPLIGDIVVALEYLASQSIPEVHRHGGRSSPQQPSSEMDRN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00649 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Pumo10g00649 379 MobiDBLite consensus disorder prediction 18 59 - -
Pumo10g00649 379 MobiDBLite consensus disorder prediction 360 379 - -
Pumo10g00649 379 SUPERFAMILY Protein kinase-like (PK-like) 51 350 IPR011009 -
Pumo10g00649 379 ProSiteProfiles Protein kinase domain profile. 76 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00649 379 Gene3D Transferase(Phosphotransferase) domain 1 152 364 - -
Pumo10g00649 379 PIRSF ILK 5 363 - -
Pumo10g00649 379 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Pumo10g00649 379 SMART serkin_6 76 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00649 379 CDD STKc_IRAK 82 350 - -
Pumo10g00649 379 FunFam Serine/threonine-protein kinase PBS1 152 366 - -
Pumo10g00649 379 PANTHER OS07G0668900 PROTEIN 3 357 - -
Pumo10g00649 379 FunFam probable serine/threonine-protein kinase RLCKVII 48 151 - -
Pumo10g00649 379 Pfam Protein kinase domain 76 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00649 379 Gene3D Phosphorylase Kinase; domain 1 47 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00649 Pumo-Chr10 8480705 8485631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00649 1 375 Glycoside Hydrolase AT3G07070 57.552 6.19e-154 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Pumo10g00649 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00649 - - gmx:100796595 590.882