Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00648 ATGGGAAACTGTTTCAGAAAGCCAGATGGTGGTAACAAGATTTACAAGAATGAGTATAAGACTCCCACCACCAATAATCCACGCCCTTCTCCCCCAGAGAAATTGGTGAAGGGAACAGTGGAAGAAAGAGGTGAGGGTCCACATAGCACGCCAAAGCTTATAAAGTATACATTGGATGAGTTGAAAAGTGCGACCAGAAACTTCAGACCGGACACGGTCCTAGGGGAGGGTGGTTTTGGACGTGTTTTCAAAGGGTGGATTGATAAGAACACCTTCAAGCCCTCAAGAGTTGGCGTTGGAATACCCGTGGCTGTGAAGAAGTCTAACCCCGATAGCCTCCAGGGTCTACAAGAATGGCAGAGTGAAGTGCAATTTTTGGGGAAATTCTCTCATCCAAACCTGGTTAAACTAATTGGCTATTGTTGGGAGGAAAATCAATTCCTGCTCGTATACGAATACATGCAAAAGGGCAGCCTCGAAAGCCACCTCTTCAGAAGAGGCCCAGAACCACTTTCGTGGGATATAAGACTCAAGATAGCCATAGGAGCTGCCAAAGGTTTAGCTTTTTTGCATACATCAGAAAAGTCTGTCATCTATAGAGACTTCAAGTCCTCCAACATTTTGCTTGATGGGGATTTTAATGCGAAACTATCAGACTTTGGATTGGCAAAGTTTGGCCCCGTCAACGGAAGATCCCACGTAACCACACGGGTCATGGGAACTTATGGTTACGCAGCCCCTGAATACATGGCCACAGGGCATCTCTATGTTAAGAGCGATGTATATGGATTCGGCGTTGTTCTGCTAGAAATGCTAACAGGCAGAGCAGCTCTAGACACAAATCAGCCCACGGGTATGCAGAATTTGGTGGAGTGCACTATGTCATCTCTACATGACAAAAAGAGACTCAAAGAGATGATGGATCAAAAGATGGACGACCAATATTCATTAAGGGCTGCATTTCAAATAGCCCAACTCATTCTCAAATGTTTAGAATCTGACCCAAAGAAACGACCCTCTATGGAGGAGGTTTTGGGAACTTTAGAAAAAGCCCAAGCCATAAAATACAAACCCAAAGGGAAGAAAACCCGTCAAACAAGTCAGCGATCAGAGGAGCATCCCCCAAATAACCAGCGTCGCTCACCACCGCTTCATTACCCCAAATCACGAACTCATTCTCCTCCACAATAG 1191 0.4542 MGNCFRKPDGGNKIYKNEYKTPTTNNPRPSPPEKLVKGTVEERGEGPHSTPKLIKYTLDELKSATRNFRPDTVLGEGGFGRVFKGWIDKNTFKPSRVGVGIPVAVKKSNPDSLQGLQEWQSEVQFLGKFSHPNLVKLIGYCWEENQFLLVYEYMQKGSLESHLFRRGPEPLSWDIRLKIAIGAAKGLAFLHTSEKSVIYRDFKSSNILLDGDFNAKLSDFGLAKFGPVNGRSHVTTRVMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGRAALDTNQPTGMQNLVECTMSSLHDKKRLKEMMDQKMDDQYSLRAAFQIAQLILKCLESDPKKRPSMEEVLGTLEKAQAIKYKPKGKKTRQTSQRSEEHPPNNQRRSPPLHYPKSRTHSPPQ 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00648 396 Pfam Protein tyrosine and serine/threonine kinase 72 346 IPR001245 GO:0004672|GO:0006468
Pumo10g00648 396 ProSitePatterns Protein kinases ATP-binding region signature. 74 107 IPR017441 GO:0005524
Pumo10g00648 396 ProSiteProfiles Protein kinase domain profile. 68 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00648 396 SUPERFAMILY Protein kinase-like (PK-like) 49 349 IPR011009 -
Pumo10g00648 396 MobiDBLite consensus disorder prediction 364 378 - -
Pumo10g00648 396 MobiDBLite consensus disorder prediction 1 51 - -
Pumo10g00648 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Pumo10g00648 396 MobiDBLite consensus disorder prediction 344 396 - -
Pumo10g00648 396 Gene3D Phosphorylase Kinase; domain 1 53 153 - -
Pumo10g00648 396 PANTHER OS01G0588500 PROTEIN-RELATED 50 352 - -
Pumo10g00648 396 CDD STKc_IRAK 74 350 - -
Pumo10g00648 396 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 154 362 - -
Pumo10g00648 396 Gene3D Transferase(Phosphotransferase) domain 1 154 373 - -
Pumo10g00648 396 MobiDBLite consensus disorder prediction 35 49 - -
Pumo10g00648 396 FunFam Serine/threonine-protein kinase BIK1 37 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00648 Pumo-Chr10 8465946 8469710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00648 56 348 Glycoside Hydrolase AT3G07070 48.986 2.23e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo10g00648 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00648 - - gmx:100812725 663.299