Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00646 ATGATGGGAGATGGTGGTGTGACATCATCTGCTGCTTCTACCATGATGGAAGCTCCACCACCTGATGGAACAACAAGTTCAATGGATTTTGACTACATGGGTGAGCTTTTCTTAGATGGGTGCTGGTTGGAAGCCTCAGCTGATGGATCTGACTTCTTGCTGCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCGTTCATTCTCCTGGCCTGCCTTGGAGCCCACGCAGGATGCTGCTTTTGGGACTCAACAAGAAAGCCACAACAACATGGTTAGTGTTGTTGCTGGTGCTGGTGGTTGTGGTCAGCAGTTTCAGTCTGAGACTCATTCAGTTGAAGATGCATCTGAAGGGGTCAGAAGGTGGTGGTTTGCACCCTCACCTAGTCCTGGACCTGGGCCTTCTATAATGGACAAGCTGATAAGGGCCCTCATGTCGATCAAAGATTACAATAGGAACAAGGATATGCTTATACAGATATGGGTGCCAGTTCATAGAGAGGGTAGGCCGATTCTTGCTGCTGATGATCTTCTGTTCTCGCTTGAATCCAAGTCTGTGAACCTTGCAAAGTACCGCCAAATCTCTGTGACATATATGTTCTCTGCAGAGGAGGGTGACTCCAAGGAGTTGGTGCGGGGATTGCCTGGTCGAGTGTTTAGGGACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGATGAGTATCCAAGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGAACGTTGGCGGTTCCAATCTTTGAGCAAGGAAGCAAGACGTGCGTGGGGGTTATTGAGGTTGTGATGACTACTCAGCAGATCAACTATGGCCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCAAAACAATTAAGTATTCAGAATGTGAAGGCATGCAACAGGTCCTATGAAGCTGCACTACCTGAGATTCAAAAGGTGTTGAGATCTGCATGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGATCCCATGTGTCCAACAAGGCAAAGAGGGGTGCCGGCACTCTGAAGATAATTATCTACTTTGTATATCTCCTGTGGAGCATGCTTGCTATGTTGGCGATCCCTCTATTAGGTCTTTTCATGAGGCTTGCACTGAGCATCACTTGTTAAAAGGTGAAGGTGTTGCTGGAGGAGCTTTTATGACAAACCAACCATGCTTCTCAGATGACATAACTTCCTTAAGCAAGAAAGACTATCCACTGTCTCATCATGCGAGGTTGTTTGGATTGCGTGCTGCTGTTGCCATACGCCTTCGAAGCATCTATAATAGTACAGATGACTATGTTCTAGAGTTCTTCTTGCCTGTAGATTGCAATGACAGTGAAGAGCAGAGAAAGATGCTTACTTCATTGTCCATCATTATACAAAGGGTTTGCCGCAGCTTGCGCGTTATAAAAGATAAGGAATTGGAGGAAGCTACCTTGTCAGTTGATGAAGTGATACCCCTTGAAGGTAGTGGATTTGCTAGGACTGCAATTTGTGCAGAACTGCAACACAAAGGGATTGCTGCCTCATTGGATACTGAAGAAAAATCAAGTGAAACAATGGGTAGAAAATTCTCTGACCCAAGGCAGCAACAAGAAAGTCCTATTTTAAAAGGAAACCTTGACTGTGTTAGGGAGTGTTCTACTTCTGTTGAGGGTAACTTATCAAGTGTAGGAACAAGTAAAACGGGAGAGAGAAGACGGGCCAAAGCTGAGAAAACTATCACTTTGCAAGTTCTTAGACAATATTTTGCTGGAAGCCTAAAAGATGCTGCCAAGAATATTGGTGTTTGTACTACAACTTTGAAGAGGATCTGCCGGCAACATGGGATAAAGCGTTGGCCATCTCGAAAGATCAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCAGTTCAAGGTGCCTCTGGTGCATTTCAAATCGATTCCTTCTATTCAAACTTCCCGGATCTGGCTTCTCCAAATTTATCAGGAACTGGCTTCTTCTCAACTTTGAATCAAAGTGATAATCCAAACTCAACAAGCACGCAGCCAGATCGTGGCTCGTTGAGCCCAGAAGGTGCATCAAAATCACCCTCTTCGTCGTGCAGTCAGAGTTCCATTTCAAGCCATTCCTGCTCTAGCATGTCAGAGCTACAACAGCATCACACAACTAACGTTGCTGGTAACAAAGATCCGGCCGCAGTTGGTGAAGATTCTACTGATGTTGTGTTGAAGAGGATCAGAAGCGATGCAGAGCTTAAAAGCCTGAGTCAAGATAGAGCAAAGCTCTTGCCAAGATCACAAAGCCAGGAAACACTTGGTGAACACCCTAAAACTCAGTATCAGCAGCCCTTATTGAAAACCAGTAGCAGCAAGGTGGATGCTCACAGAGTAAAAGTCACATATGGAGATGAGAAAACCCGGTTTCGGATGCCGAAGAATTGGGGTTATGAAGATCTTCTGCAGGAAATTGCTAGGAGATTTAACTTGAGTGACATGAGCAAATTTGATGTCAAATACTTTGATGATGACTGTGAGTGGGTACTACTCACTTGTGATGCTGATTTGGAGGAGTGCATTGATGTTTGTCAATCTTCTGAGAGTGGTACCATCAAACTTAGTCTACAAGCTTCTAGTCATAGTATGAGAAGTTCTTTAGAATTTAGATAA 2706 0.4446 MMGDGGVTSSAASTMMEAPPPDGTTSSMDFDYMGELFLDGCWLEASADGSDFLLQSPSFSNPLFDRSFSWPALEPTQDAAFGTQQESHNNMVSVVAGAGGCGQQFQSETHSVEDASEGVRRWWFAPSPSPGPGPSIMDKLIRALMSIKDYNRNKDMLIQIWVPVHREGRPILAADDLLFSLESKSVNLAKYRQISVTYMFSAEEGDSKELVRGLPGRVFRDKVPEWTPDVRFFRSDEYPRVDHAQEYDVRGTLAVPIFEQGSKTCVGVIEVVMTTQQINYGPELESVCKALEAVDLRSSKQLSIQNVKACNRSYEAALPEIQKVLRSACEMHKLPLAQTWIPCVQQGKEGCRHSEDNYLLCISPVEHACYVGDPSIRSFHEACTEHHLLKGEGVAGGAFMTNQPCFSDDITSLSKKDYPLSHHARLFGLRAAVAIRLRSIYNSTDDYVLEFFLPVDCNDSEEQRKMLTSLSIIIQRVCRSLRVIKDKELEEATLSVDEVIPLEGSGFARTAICAELQHKGIAASLDTEEKSSETMGRKFSDPRQQQESPILKGNLDCVRECSTSVEGNLSSVGTSKTGERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPDLASPNLSGTGFFSTLNQSDNPNSTSTQPDRGSLSPEGASKSPSSSCSQSSISSHSCSSMSELQQHHTTNVAGNKDPAAVGEDSTDVVLKRIRSDAELKSLSQDRAKLLPRSQSQETLGEHPKTQYQQPLLKTSSSKVDAHRVKVTYGDEKTRFRMPKNWGYEDLLQEIARRFNLSDMSKFDVKYFDDDCEWVLLTCDADLEECIDVCQSSESGTIKLSLQASSHSMRSSLEFR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00646 901 MobiDBLite consensus disorder prediction 525 547 - -
Pumo10g00646 901 CDD PB1_NLP 808 889 IPR034891 -
Pumo10g00646 901 ProSiteProfiles PB1 domain profile. 807 890 IPR000270 GO:0005515
Pumo10g00646 901 SUPERFAMILY CAD & PB1 domains 806 892 - -
Pumo10g00646 901 MobiDBLite consensus disorder prediction 680 749 - -
Pumo10g00646 901 MobiDBLite consensus disorder prediction 680 739 - -
Pumo10g00646 901 SUPERFAMILY GAF domain-like 202 283 - -
Pumo10g00646 901 MobiDBLite consensus disorder prediction 7 21 - -
Pumo10g00646 901 SMART PB1_new 807 890 IPR000270 GO:0005515
Pumo10g00646 901 Pfam RWP-RK domain 588 636 IPR003035 -
Pumo10g00646 901 ProSiteProfiles RWP-RK domain profile. 575 656 IPR003035 -
Pumo10g00646 901 Pfam PB1 domain 808 889 IPR000270 GO:0005515
Pumo10g00646 901 Gene3D - 805 889 - -
Pumo10g00646 901 MobiDBLite consensus disorder prediction 773 800 - -
Pumo10g00646 901 MobiDBLite consensus disorder prediction 1 25 - -
Pumo10g00646 901 PANTHER PROTEIN NLP8 105 896 IPR045012 GO:0003700
Pumo10g00646 901 MobiDBLite consensus disorder prediction 770 800 - -
Pumo10g00646 901 Gene3D - 173 305 IPR029016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00646 Pumo-Chr10 8420778 8425667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00646 28 892 NLP Transcription Factor Family AT1G20640 49.943 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pumo10g00646 PB1 2.8e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00646 - - gmx:100790922 1563.51