Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00620 ATGTCATCGGCGGCGAGAACCCACGGCGGAGAGGAGGGAAAGCACTACCCTGCTCCACTGGCCCCTCATGAGGACGTTGTCAAGGACTCCACTCTCTTCTGGGACACTCTAAGGCGCTTTCACTTTGTTATGGGTACCAAATTTATGATTCCTGTGATTGGAGGGAAGGAGCTGGATTTGCACGTTCTTTACGTGGAAGTTACGAGACGAAGTGGCTACGAGAAGGTGGTTGCAGAGAAGAAGTGGAGGGAAGTTGGTAGTGTTTTCAAGTTCTCAGCTACCACCACAAGCGCTTCTTTTGTACTCAGGAAACATTATTTCAGTCTTCTTTATCATTATGAACAAGTTCACTTCTTTAAAGCGAGGGGTCCTATCTACACTCCATCAGCAGATGCATTTTCCGGCAACAGCCCTTCGTGGAGACCTGAATTAGCTATTGTGGAATATTCGCCTAAGCCGATTAATAATAATAGTACTGAATCCCGTGCTGAAGATACTTCATGTCTTTTAGGAAATGGAACCATCGAGGGAAAATTTGACTGTGGTTATTTAGTGTCGGTGAAGCTTGGTTCGGAGGTTCTTAGAGGGGTGCTTTACCATCCAGAGCAATTGGTTCCTTCTCCTCCATCGATTCCTCAACACGAGAGTGCCATTGTACCATTCAACCGCAAACCTCACCCTTCTGGTTCTGGTTCTGGTCGTAGGAAGAGAAACAAAAGAAGGTGGGACCCCAACTATCCAAAGCCGAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACTCTCTCAAAACTCTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGTCATGGAACAGTCTTAGCCCAGAAGAAAGAATGGTTTATCAGAACATTGGCTTAAGAGACAAAGAAAGGTACAAGAGAGAATTGACGGAGTACAAAGAGAAGATGAAGCTTAGGCAGACCCCAGAAGTTGGACGTCCATAG 987 0.4559 MSSAARTHGGEEGKHYPAPLAPHEDVVKDSTLFWDTLRRFHFVMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFKFSATTTSASFVLRKHYFSLLYHYEQVHFFKARGPIYTPSADAFSGNSPSWRPELAIVEYSPKPINNNSTESRAEDTSCLLGNGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQLVPSPPSIPQHESAIVPFNRKPHPSGSGSGRRKRNKRRWDPNYPKPNRSGYNFFFAEKHYSLKTLYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELTEYKEKMKLRQTPEVGRP 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00620 328 Gene3D - 21 124 IPR036431 GO:0003677
Pumo10g00620 328 Pfam HMG (high mobility group) box 247 314 IPR009071 -
Pumo10g00620 328 MobiDBLite consensus disorder prediction 1 22 - -
Pumo10g00620 328 ProSiteProfiles ARID domain profile. 27 118 IPR001606 GO:0003677
Pumo10g00620 328 SUPERFAMILY ARID-like 24 126 IPR036431 GO:0003677
Pumo10g00620 328 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 247 314 IPR009071 -
Pumo10g00620 328 Pfam ARID/BRIGHT DNA binding domain 32 114 IPR001606 GO:0003677
Pumo10g00620 328 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 320 - -
Pumo10g00620 328 SMART bright_3 28 119 IPR001606 GO:0003677
Pumo10g00620 328 CDD HMG-box_AtHMGB9-like 247 313 - -
Pumo10g00620 328 CDD ARID_HMGB9-like 29 114 IPR045303 GO:0003677
Pumo10g00620 328 Gene3D High mobility group box domain 231 325 IPR036910 -
Pumo10g00620 328 SMART hmgende2 246 315 IPR009071 -
Pumo10g00620 328 MobiDBLite consensus disorder prediction 205 247 - -
Pumo10g00620 328 SUPERFAMILY HMG-box 244 317 IPR036910 -
Pumo10g00620 328 MobiDBLite consensus disorder prediction 8 22 - -
Pumo10g00620 328 SMART ARID_2 24 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00620 Pumo-Chr10 8066338 8068662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00620 14 321 ARID Transcription Factor Family AT1G76110 65.909 3.59e-140 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pumo10g00620 ARID 8.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00620 - - gmx:100784746 624.394