Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00619 ATGGGAGATACAGAATCTTGCAGTAGCGGAATTTTCAATATTTCTGGATGGAATCGATGTCCAAAACAGAGACAGAAGGTTGGAGTTTACAGCGAGGTTTTATGTAGACTTAAGGAATTGAATGTTCCAGAGGCTGTGGTTCCTGGTTTTGAGGACGAGCTTTGGGCTCACTTCTATCGCCTTCCTGCTAGGTATGCGATGGACATGAATGTGGAGAGGGCCCAAGATGTTCTTATGCATAAAAGGCTACTGGACATAGCACGAGCCCCAACTACAGTAACCAGACCTGCAGTTGAAGTCCGTCTTGTACAGGTTTGTTCTGCTTCTGCTGGTCGTTCTAGTAAATCCCTTCATTCAAACTCAGAGAGTAAAGTTTGTCCTGAAGATTCTGCTATTCCAAGCAATATGAGCTTCCATCCTCCCCCGGCCTTTGGTTCGTCAGCTAACGTGGAACTTGCCCTTTTTGAGAGCCAGTTACAAGTCCGAGACAGGGATAACTATTTGAATTTTTATGCACATTATGCCCAGCCCATGCATGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTCTCTCAGTTGACTTCCTTACTATCTGAGACTGGGCTGGACATTCAAGAAGCACACGCTTTTTCGACAATAGATGGTTATTCATTGGATGTTTTTGTTGTTGGTGGTTGGGCAGTTGAGGAGACTGAGAAGTTAAAACATGAACTAGCTAAGAAAATTCAGAAACTCCAGCAACTTAAATTGAAAGCAAATGGTAGTCTTCCTACTGCAAAGACAGAGCAAACCGGGATGAACTTTATCTGGAGAATTGGTGCTGGGTGTTTGAGACATGAAAAGAAAATTGCATCGGGACCTTTCAGTGATTTGTATAAAGGTAGGTTCTGCAATCAAGATGTAGCTATCAAAGTCCTTAAGCATGAGAATTTGAATGAAAATATACTAAGGGAGTTTGCTCAGGAAGTGTATATCCTAAGTAAAATTCAGCACAAGAATGTTGTCAAATTTGTTGGCGCTTGTACAAAACCCCCAAACATTTACCTTGTCACAGAATACATGTCTGGTGGAAGTATGTTCGACTTTTTGCATAAACAGAAGACTGTCCTTGCTCTTCCATCTTTACTCAAAGTAGCCATTGATGTTTCCGAAGGAATGAAATATTTGCATCAAAATGATATCATACATCGGGACCTTAAAGCGGCTAATCTTTTGATAGATGAGAATGGGGTAGTTAAGGTTGCGGATTTTGGTGTAGCTAGAGTGCACAATCAGTCTGGTATCATGACTGCAGAAACAGGAACTTATCGGTGGATGGCTCCAGAGCTTCCTTATGATCATTTGTCCCCATTGCAAGCAGCAGTTGGAGTGATCCAGAAGGGTTTAAGACCAAAAATTCCAAGGCATACTCATCCGAAGTTAGTGGAATTGCTTCAACGGTGCTGGCACCAAGATTCATCTTTGAGACCTAATTTCTCAGAAATTCTGGAATTTCTGCTGCATGTGACCAAGACGGTTACTGGGGAATATGAAGGCCAGGAGAATGCATGA 1557 0.42 MGDTESCSSGIFNISGWNRCPKQRQKVGVYSEVLCRLKELNVPEAVVPGFEDELWAHFYRLPARYAMDMNVERAQDVLMHKRLLDIARAPTTVTRPAVEVRLVQVCSASAGRSSKSLHSNSESKVCPEDSAIPSNMSFHPPPAFGSSANVELALFESQLQVRDRDNYLNFYAHYAQPMHEITISTNDKPKLLSQLTSLLSETGLDIQEAHAFSTIDGYSLDVFVVGGWAVEETEKLKHELAKKIQKLQQLKLKANGSLPTAKTEQTGMNFIWRIGAGCLRHEKKIASGPFSDLYKGRFCNQDVAIKVLKHENLNENILREFAQEVYILSKIQHKNVVKFVGACTKPPNIYLVTEYMSGGSMFDFLHKQKTVLALPSLLKVAIDVSEGMKYLHQNDIIHRDLKAANLLIDENGVVKVADFGVARVHNQSGIMTAETGTYRWMAPELPYDHLSPLQAAVGVIQKGLRPKIPRHTHPKLVELLQRCWHQDSSLRPNFSEILEFLLHVTKTVTGEYEGQENA 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00619 518 CDD STKc_MAP3K-like 285 501 - -
Pumo10g00619 518 Coils Coil 230 253 - -
Pumo10g00619 518 ProSiteProfiles ACT domain profile. 180 259 IPR002912 -
Pumo10g00619 518 SMART serkin_6 279 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00619 518 ProSiteProfiles Protein kinase domain profile. 279 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00619 518 FunFam Serine/threonine-protein kinase isoform 1 269 357 - -
Pumo10g00619 518 SUPERFAMILY ACT-like 178 247 IPR045865 -
Pumo10g00619 518 Pfam Protein tyrosine and serine/threonine kinase 280 445 IPR001245 GO:0004672|GO:0006468
Pumo10g00619 518 Pfam Protein tyrosine and serine/threonine kinase 446 501 IPR001245 GO:0004672|GO:0006468
Pumo10g00619 518 Gene3D Transferase(Phosphotransferase) domain 1 353 448 - -
Pumo10g00619 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Pumo10g00619 518 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 116 501 - -
Pumo10g00619 518 Gene3D Transferase(Phosphotransferase) domain 1 449 518 - -
Pumo10g00619 518 SUPERFAMILY Protein kinase-like (PK-like) 264 501 IPR011009 -
Pumo10g00619 518 Gene3D Phosphorylase Kinase; domain 1 274 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00619 Pumo-Chr10 8044842 8054756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00619 5 508 MAP Kinase Kinase Kinase AT4G35780 52.477 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Pumo10g00619 PK_Tyr_Ser-Thr 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00619 - - gmx:100818047 885.56