Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00618 ATGGCCCAAAGAGAGGAAGTTGTGGTTGATTTTGAAGGTAACTATGGCCGCAGCAACAGCAAAGAAGAAAACTTAGCATCAAAAGTTAGTGACAAGCTTCATGACATGCAGGAAAAACCCAAAGTCAGCGAGTCAGCACAAAAGAGGAAGCAAGATCAGCAGCAAAACCAAGAAAACCATCACCACCACCAAGCTTCATCATATTCAGGAGAAAACGTTGTGAGGTCCACTTCAAATAATTCAACTCCACGAAACTCATGGAGATCACCAATAAGCAGAACAAAGTCTCGGCTTATTGACCCTCCAGAGGAATCATGTGCAAATTCAGAGTCGGGTGGACAAAAAGAAAAAGTGCCAGAAAATGATGACAATGTTGAGGACATGCCAGAAATTTATAAGAGAACGAGGTTCAGTGCATTCTCGATACTTCAGTGGCTCTGTCTTGCTTTAATAGTAGTAGCCTTGTTTTCTAACCTTTGGATTTCACGCTTACAAAGGCTTAAACTCTGTGGCCTTCCCCTATGGGAATGGGAAACAATGATTTTAGTTCTAATTTGTGGGCGCTTGCTCTCAGGTTGGGTAATCAAACTAATTGTCTTTTTCGTGGAACGCAATTTTATCCTAAGAAAACGAGTGCTGTATTTTGTGTACGGTTTGAAAAATTCCGTGAAGAACTGTGTCTGGTTGGGCCTGGTTTTGCTCGTGTGGCACTTTATTTTGGTCAACGCGGTGAAGAAAAAAGTCAACGACAGGATTTTGTCGTATGTGACTAAGGTTCTGGTGTGTCTGTTCATTGGCACTCTCATATGGCTTCTGAAAACCATCCTCATTAAGGTCTTTGCTTTGCACTTTCACGTGAAAACGTTCTTTGAACGGATTCGGGAAGCTCTGTTCAGCCAATATGTGATTGAAACGCTGTCGTGTAATCGGTTGAGGGAAGAGGAAGGTGAAGATAGATCCGTTGGGAGGGTGTTGTGTAATAATAAGAAGCAAGATGAGGAAATGTCGATTGAGCAATTGCGTAAGTTGAATAAGAGAAATATATCGGCGTGGAATATGAAGAGGATGATTAACATCGTCATGCACGGGGCGTTTACTACACTGGACGAACGTATATTGTGTTCTGATATTGAGGATGAACCTTTGCTGCAAATTAGAAGCGAATGCCAAGCAAAACGTGCAGCTCACAAAATATTTCATAACGTGGCGCACCCAGGATCCCAATATATTTTCTTGCAAGATGTGATGCAGTTTATGCGAAGAGACGAAGCTTTGAAGTCAATGGATCTGTTAGGAGCAGCGTGTACAGACCAGGGCATTAGCATGTCCTCTCTTAGAGAGTGGATGGTGAATGCATTCAGGGAGAGAAGGGCACTAGCATTATCACTCAAAGACACAAAAACTGCTGTAGATGAGTTCCATAATATGTTGAACATCATTGTTGGTATTGTCATTTTGATAGTTTGGCTTGTTATACTTGGAACTCCAATCCTACATTTCGTTGTCTTCATCGGGTCCCAGCTTCTATTGGCAGTGTTTGTGTTTGGGAATTCTTGTAGGACTGTTTTTGAAGCAATCATCTTTTTATTTTTAATGCACCCATTTGATGTGGGTGATCGATGTGAAGTAGAAGGAGTCCAGATGGTAGTGGAAGAGATGAATATACTGACGACAGTGTTTCTGAAGTGCGATAACCAAAAGGTCACATATCCAAACAGTGTTCTAGCTACCAAGGCCATCATTAATTATCAGCGTAGTCCAGACATGGGAGATGCAGTGGATTTCTGTATTCATATCTCCACTCCATTAGATAAAGTTGCTAGTATGAAAAAAAGAATTATAGAGTATATTGAAAGGAAGAATGAGCACTGGCATGTGGGTCCAATGGTAATCATGAAGGATGTGGAAGAGTTGAACAAATTGAACATGTCAGTGTGGCTTACACACAAAATGAATTATCAGGACATCAAAGAAAGATGGATCAGGAGGGCCCAGTTGATTGAAGAGATGATCAAAGTGTTTAGAGAACTTGATGTTGAATACCGGCTTCTCCCAATTGATGTCAATGTCCGAAATATGCCTTCTCTGCTTTCGAATAAGCCTCCATCCAATTGGAAAACTTGTACCAGCTCACTCCCTTAG 2142 0.4141 MAQREEVVVDFEGNYGRSNSKEENLASKVSDKLHDMQEKPKVSESAQKRKQDQQQNQENHHHHQASSYSGENVVRSTSNNSTPRNSWRSPISRTKSRLIDPPEESCANSESGGQKEKVPENDDNVEDMPEIYKRTRFSAFSILQWLCLALIVVALFSNLWISRLQRLKLCGLPLWEWETMILVLICGRLLSGWVIKLIVFFVERNFILRKRVLYFVYGLKNSVKNCVWLGLVLLVWHFILVNAVKKKVNDRILSYVTKVLVCLFIGTLIWLLKTILIKVFALHFHVKTFFERIREALFSQYVIETLSCNRLREEEGEDRSVGRVLCNNKKQDEEMSIEQLRKLNKRNISAWNMKRMINIVMHGAFTTLDERILCSDIEDEPLLQIRSECQAKRAAHKIFHNVAHPGSQYIFLQDVMQFMRRDEALKSMDLLGAACTDQGISMSSLREWMVNAFRERRALALSLKDTKTAVDEFHNMLNIIVGIVILIVWLVILGTPILHFVVFIGSQLLLAVFVFGNSCRTVFEAIIFLFLMHPFDVGDRCEVEGVQMVVEEMNILTTVFLKCDNQKVTYPNSVLATKAIINYQRSPDMGDAVDFCIHISTPLDKVASMKKRIIEYIERKNEHWHVGPMVIMKDVEELNKLNMSVWLTHKMNYQDIKERWIRRAQLIEEMIKVFRELDVEYRLLPIDVNVRNMPSLLSNKPPSNWKTCTSSLP 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00618 713 Pfam Mechanosensitive ion channel 475 680 IPR006685 GO:0016020|GO:0055085
Pumo10g00618 713 FunFam Predicted mechanosensitive ion channel 534 583 - -
Pumo10g00618 713 PIRSF Memb_At2g17000 3 711 IPR016688 -
Pumo10g00618 713 Gene3D - 534 583 IPR023408 -
Pumo10g00618 713 MobiDBLite consensus disorder prediction 60 93 - -
Pumo10g00618 713 MobiDBLite consensus disorder prediction 1 125 - -
Pumo10g00618 713 SUPERFAMILY Sm-like ribonucleoproteins 524 583 IPR010920 -
Pumo10g00618 713 MobiDBLite consensus disorder prediction 24 59 - -
Pumo10g00618 713 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 24 705 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00618 Pumo-Chr10 8040351 8043577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00618 30 711 Mechanosensitive Ion Channel Family AT1G78610 46.925 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00618 K22048 - cave:132190409 835.869