Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00601 ATGGCTAAAGTCATGTTTGTTTTGGTCAGCTTCCTCGTATTATGCTGTTTCACAATTAACACTTGCGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGAGGTAGCGATGCCTCGGGGACAATGGGAGGAGCTTGTGGGTATGGGAATCTGTATTCCACAGGGTACGGAACTGATACAGCGGCATTAAGTACTGCCTTATTTAACGATGGAGCTTCGTGTGGGGAGTGCTACAAAATCATATGCGATTATCAAGCAGACCCCAGATGGTGCTTAAAAGGAACATCCGTGACCATAAGCTGCCACAAACTTCTGCCCTCCCAATTTTGCTCTTCCCAACAACAACGGAGGGTGGTGCAACCCACCTCTCAAACACTTCGATATGGCTCAACCTGCATGGGAAAAGATTGGTATCTATAG 432 0.4722 MAKVMFVLVSFLVLCCFTINTCAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTAALSTALFNDGASCGECYKIICDYQADPRWCLKGTSVTISCHKLLPSQFCSSQQQRRVVQPTSQTLRYGSTCMGKDWYL 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00601 143 SMART dpbb_1 64 132 IPR007112 -
Pumo10g00601 143 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 143 IPR007112 -
Pumo10g00601 143 SUPERFAMILY Barwin-like endoglucanases 28 117 IPR036908 -
Pumo10g00601 143 PANTHER EXPANSIN-A15 7 119 IPR002963 GO:0009664
Pumo10g00601 143 Pfam Lytic transglycolase 64 103 IPR009009 -
Pumo10g00601 143 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Pumo10g00601 143 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Pumo10g00601 143 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Pumo10g00601 143 Gene3D - 15 135 IPR036908 -
Pumo10g00601 143 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Pumo10g00601 143 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00601 Pumo-Chr10 7597834 7598460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00601 1 119 Expansin Gene Family AT4G01630 56.303 8.80e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00601 - - gmx:100792023 219.935