Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00600 ATGAAATGTGATCAAAATAGTATGGTAGCATGCGTGAAGAAGGGAGGGGTTAGGTTCAGTGTGAATGGGAGAGACTACTTTGAGCTTGTATTGATCAGCAATGTGGGAGGGGCTGGATCTATCCAATCTGTGTCCATCAAAGGCTCAAAAACTGGATGGATGACCATGTCTAGAAACTGGGGTGCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCTTTGTCTTTCAGGGTCACAACCACCGATGGTGTAACTAGAATTTTCCAAGATGTGGTTCCATCAAATTGGGCTTTTGGCCAGACTTTCCCTACTAATGTCCAGTTTTAA 330 0.4303 MKCDQNSMVACVKKGGVRFSVNGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMTMSRNWGANWQSNAYLNGQSLSFRVTTTDGVTRIFQDVVPSNWAFGQTFPTNVQF 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00600 109 Gene3D - 15 109 IPR036749 -
Pumo10g00600 109 PANTHER EXPANSIN-A15 9 105 IPR002963 GO:0009664
Pumo10g00600 109 Pfam Expansin C-terminal domain 17 94 IPR007117 -
Pumo10g00600 109 FunFam Expansin 16 109 - -
Pumo10g00600 109 PRINTS Expansin/Lol pI family signature 53 67 IPR007118 GO:0005576
Pumo10g00600 109 PRINTS Expansin/Lol pI family signature 91 105 IPR007118 GO:0005576
Pumo10g00600 109 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 26 105 IPR007117 -
Pumo10g00600 109 PRINTS Expansin signature 62 83 IPR002963 GO:0009664
Pumo10g00600 109 PRINTS Expansin signature 15 27 IPR002963 GO:0009664
Pumo10g00600 109 PRINTS Expansin signature 27 48 IPR002963 GO:0009664
Pumo10g00600 109 PRINTS Expansin signature 91 107 IPR002963 GO:0009664
Pumo10g00600 109 SUPERFAMILY PHL pollen allergen 13 104 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00600 Pumo-Chr10 7597162 7597604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00600 9 109 Expansin Gene Family AT1G20190 77.228 8.01e-55 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00600 - - gmx:100527629 204.912