Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00572 ATGTGTGTGTTGATGTCGACTTCGGGCGAGGATCAATCCCATCCCAATCTTCATCTTCCATCTCAATTCAAATTCGAGCTATTGCATTCCCCTTCTCACTTCTCTCCTCATCCTCATCTTCATTCCCATTCTCTTTTTCCCAATTTCCCCCTCACCTTGAGTCAAATGTATGAAAGCAATAATTTCAAGTCTCACACAAGTAACATCCAAGTAATTCCTGCTATGAGCGAAACACTTAATCTTCCTCCTCCACTTCAAACCGACCCTAGCACAAGAGCAAAGCAAAATGGTAAATCAAAAGTTTCAAGAAATGCAAAATCTGGGACTCACAGACCAAATGCCGATTCCACTAATTCAACTGCAGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACCCTGGATCTAAATAAAACCGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGATTGATAGAGAAAACATCAAAGAATCATATACAGTGGAAGGGATGCGATGGACTTGGGCCACGAGAACTGGAAGACCAAGTTAATAGTCTAAAGGCTGAAGTTGATAGTCTATATGCCGAGGAATGCGAACTTGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAAACTGGAGGAAGGCGAAAGCTCTCAAAAGTACCTTTTTTTGACCAAGGAAGATATTCTTAGTCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTCCATCGAGGTCCCTGATCCTGATGAGGAATTAGGTTTCCGGCAAAGGCAGTACAAAATGATTGTTAGAAGTGCCATTGGACCAATATATTTGTACCTCTTGAGCAAGGACGGCCGCAACTTTGAGGATGATAGTGTCAAACGGGTGAAATTAATGGATCCATCATGGAATAGTGATCCCTACAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAACGTGATGAAAAAAATCCTTCTGAGAGTTTCAGTTTGCATGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACGGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGCATTGTGGGGAAATGAGTAG 1188 0.4099 MCVLMSTSGEDQSHPNLHLPSQFKFELLHSPSHFSPHPHLHSHSLFPNFPLTLSQMYESNNFKSHTSNIQVIPAMSETLNLPPPLQTDPSTRAKQNGKSKVSRNAKSGTHRPNADSTNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELEDQVNSLKAEVDSLYAEECELDDCIRKKQELLRKLEEGESSQKYLFLTKEDILSLPCFQNQEIIAIKAPKASSIEVPDPDEELGFRQRQYKMIVRSAIGPIYLYLLSKDGRNFEDDSVKRVKLMDPSWNSDPYRKRGVGLLESQRDEKNPSESFSLHGSQAFGIQEITPTDFEMEDDYWFQSDPGVSQTALWGNE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00572 395 Pfam E2F transcription factor CC-MB domain 207 306 IPR032198 GO:0046983
Pumo10g00572 395 MobiDBLite consensus disorder prediction 79 121 - -
Pumo10g00572 395 FunFam E2F transcription factor 1 120 193 - -
Pumo10g00572 395 PANTHER TRANSCRIPTION FACTOR E2F 79 392 IPR015633 GO:0000978|GO:0006357
Pumo10g00572 395 CDD E2F_DD 202 309 IPR032198 GO:0046983
Pumo10g00572 395 SMART E2F_TDP_2 126 191 IPR003316 GO:0005667|GO:0006355
Pumo10g00572 395 Gene3D - 198 309 - -
Pumo10g00572 395 SUPERFAMILY E2F-DP heterodimerization region 202 309 IPR037241 -
Pumo10g00572 395 Coils Coil 221 241 - -
Pumo10g00572 395 Pfam E2F/DP family winged-helix DNA-binding domain 128 191 IPR003316 GO:0005667|GO:0006355
Pumo10g00572 395 SUPERFAMILY "Winged helix" DNA-binding domain 126 189 IPR036390 -
Pumo10g00572 395 Gene3D - 121 193 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00572 Pumo-Chr10 7245155 7249305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00572 6 394 E2F-DP Transcription Factor Family AT1G47870 44.235 7.32e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pumo10g00572 E2F_CC-MB 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00572 K06620 - gmx:100797301 595.89