Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00555 ATGGATGATGCCGGGCATCGTGAAAATGGAAGGCACAAAGCAGCAGATCAATATAAATCTGCACAGGGACAGTGGTTGATGCAACATCAGCCTTCCATGAAGCAGATTATGGCAATTATGGCTGAAAGAGATGCAGCCATTCAAGAAAGAAATCTGGCCATTTCCGAGAAAAAGGCAGCATATGCTGAGCGTGACATGGCATTCCTGCAGCGAGATGCTGCGATTGCAGAACGAAATAATGCAATTTTGGAACGAGATAATGCAATTGCAACTCTTCAGTATCGTGAAACCTCCTTAAGTAGTGGCAGTATGCCATCATGCCCTCCAGGATGCCAAATTTCACGTGGTGTCAAGCATATACATCATCCCCAGCAACAGGTACACCATATACCTAACATGGGTGATGCCTCTTACAACACACGGGAAATGCACACAACCGATGCCCTCCCTGCAGCCCCCATCCCTTCTGAGGCAGGAAAATCAAGGCGGGCCAAGCGACCAAAGGAACCGAAGTCAACTTCACCTAATAAGAAGACTTCAAAAGCAGCAAAAAAAGTCAAGAAGGAGAGTGAAGACTTGAATAAGGTTATGTTTGGCAAGGCACATGAGTGGAAGAGTGGTCAGGAAATGGTTAATGGAGGTGATGATCTTAACAAGCAGTTAGCAGTGTCAAAGGCTGATTGGAAAGGTCAGGATTTGGGGTTGAACCAAGTGGCTTATGACGAGTCAACCATGCCAGCGCCAGTATGCTCTTGTACTGGTGTCCTGAGGCAGTGTTACAAATGGGGTAATGGAGGTTGGCAGTCTGCCTGTTGCACAACTACTCTGTCAATGTATCCACTTCCTGCAGTGCCTAACAAGAGGCATGCTCGGGTTGGCGGTCGGAAGATGAGTGGGAGTGCTTTCAACAAGCTGCTTAGTCGCCTTGCAGCAGAAGGTCATGATCTGTCAAACCCTGTTGACCTCAAGGACCACTGGGCCAAACATGGAACGAACCGATACATCACCATAAAGTAG 1017 0.4759 MDDAGHRENGRHKAADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAIATLQYRETSLSSGSMPSCPPGCQISRGVKHIHHPQQQVHHIPNMGDASYNTREMHTTDALPAAPIPSEAGKSRRAKRPKEPKSTSPNKKTSKAAKKVKKESEDLNKVMFGKAHEWKSGQEMVNGGDDLNKQLAVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00555 338 MobiDBLite consensus disorder prediction 1 15 - -
Pumo10g00555 338 MobiDBLite consensus disorder prediction 147 191 - -
Pumo10g00555 338 MobiDBLite consensus disorder prediction 1 22 - -
Pumo10g00555 338 SMART GAGA_bind_2 1 338 IPR010409 -
Pumo10g00555 338 Coils Coil 59 86 - -
Pumo10g00555 338 PANTHER - 1 338 IPR010409 -
Pumo10g00555 338 MobiDBLite consensus disorder prediction 159 175 - -
Pumo10g00555 338 Pfam GAGA binding protein-like family 1 338 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00555 Pumo-Chr10 7016552 7020794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00555 66 338 BBR or BPC Transcription factor family AT5G42520 65.517 8.71e-122 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Pumo10g00555 GAGA_bind 6.7e-111 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00555 - - gmx:100783502 637.491