Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00549 ATGGAAATGGCAACAACGGTTATATTCTTCAGCTTCACACTCGTCGCATTCTTCGCCACCCTAACCATAACCTTCGCCCAGAACAACACCGCCTTAGAAATTGAAGCCTTAACCACATTCAAGCGCAACCTCCACGACCCTCTCGGTTCCTTGGACGGTTGGGATCCTTCCACGCCATCAGCACCCTGCGACTGGCGCGGCATTGTCTGTCAAAACAACCGAGTTCACCAGCTCCGTTTACCGCGTCTTCAACTCGCGGGTCAACTCGCTCCTTCCCTCTCCAACCTCCTTCAACTCCGCAAACTCAGCCTCCACTCCAACAACCTCAATGCCTCCATCCCTCTTTCTCTCACGCGCTGCGTCTTCCTACGCGCCGTCTACCTCCACAACAACAAGCTCTCCGGCCACCTCCCGCCGCCGCTCCTCAACCTCACCAACCTCCAAATCCTCAACCTCGCCCGCAACCTCCTCACCGGAAAAGTCCCCGCCCATCTCTCCGCCTCCCTCCGCTTCCTCGACCTCTCCGACAACGCCTTCTCCGGCGACATTCCGGCCAACTTCTCCTCCAAATCTCAGCTCCAGCTCATCAACCTCTCCTACAACAGCTTCAGCGGAGGAATACCGGCCTCCATCGGAACGCTGCAAAATCTCCAGTACCTATGGTTAGACTCAAACCACATTCACGGAACCCTACCTTCCGCTCTCGCGAACTGTTCCTCTCTGGTGCACCTCACCGCAGAGGATAACGCTCTCACTGGACTTCTTCCCCCCACCCTGGGAGGAACCATGTCGAAGCTTCTTCAGGTACTTTCGCTTTCGCGGAACCAACTTTCGGGTTCGGTCCCCGCGTCTGTGTTTTGCAACGCGCACATGCGAAGCGTCAAGCTCGGGTTTAATTCCTTCACGGGACTTTCCGCGCCGCAAAATGGGGAATGCGACAGCGTTTTGGAGGTTTTGGATATTAAAGAGAATCGCATTGTTCACGCGCCGTTTCCCTCCTGGTTGACCCACGCGAGCACGTCGTTGAAGGCTCTCGATCTTTCTGGAAACTTATTTACCGGTTCTCTGCCGGTGGACGTTGGGAACCTTTCCGCTTTGGAAGAGTTGAGAGTGGGGAATAATTTGTTATCCGGTGGAGTTCCGCGTAGCATTGTGAATTGTAGGTTGTTAACGGTTCTTGATCTTGAGGGTAACCGGTTCTCTGGGTTAATTCCTGAGTTTCTCGGGGAACTGAGGGACCTGAAGGAGTTGTCTCTTGCTGGTAACCTTTTTACCGGTTCGGTACCTTCTAGTTATGGAGCGCTTTCTGCGCTTGAGACGCTGAATTTGAGTGATAATAAGTTAACCGGTGTGGTGCCTAAGGAGATCATGCAATTGGGGAACGTGAGTGCTTTGAATCTCAGCAATAACAATTTTTCGGGTCAAGTTTGGTCTAATATTGGGGACTTGACGGGTTTGCAGGTTCTTAATTTGAGTCAATGTGGGTTTTCAGGGAGGGTTCCTGCCACATTGGGGAATTTGATGAGATTAACGGTGTTGGATTTGAGCAAGCAGAACCTCTCGGGTGAGTTGCCCCTTGAGGTTTTTGGGTTACCGAGTCTGCAAGTTGTGGCGCTGCAAGAGAACCGTTTGAGTGGTGATGTTCCTGAGGGTTTCAGCAGCATAGTTAGTCTGCGGTATCTTAATCTCAGTTCAAATGAATTTGTTGGTAACATTCCAATAACTTATGGGTTCCTTAGCTCCTTGACGGTTCTCTCTTTGTCTCACAATGGTGTTTCTGGTGAAATACCTCCCGAAATTGGTGGTTGTTCGCAACTTGAAGTTTTGCAGCTACAGTCTAATTCTCTAGAGGGTAACATTCCTGGTGATATCTCTCGGCTCTCTCGTTTAAAGGAGCTTAATTTGGGACACAATAGGTTGAAAGGTGACATCCCAGATGAAATATCAGAGTGTTCTGCTCTGAGTTCACTCTTGTTGGATAGTAATCACTTCACGGGTCATATACCAGGTTCCTTGTCAAAATTGTCAAATTTGACCGTGTTGAACCTTTCTTCAAATCAATTGAAAGGGGAAATTCCGGTGGAACTATCAAGCATTTATGGTTTGGAGTATTTAAATGTGTCTAGCAATAACCTTGAGGGTGAGATTCCATACATGCTTGGTACTAGATTCAACGACCCTTCTGTGTTTGCAATGAACCAAGGGTTATGCGGGAAGCCCTTGCAGAGAGAATGTGCAAATGAAAAAAGGAGAAAGAGGAGAAGGCTAATAATCTTCATAGGAGTGGCCGTGGCCGGTTTATGCCTTTTGGCGCTGTGTTGTTGCGGCTATGTTTACAGCCTCTTGAGGTGGCGCAAGAAGCTTCGAGAAGGGGTAACGGGTGAGAAGAAACGGAGCCCCACAACAAGTGTGGGAGGAGGTAGCAGAGGGAGCGGGGAAAACGGGGGACCAAAGCTAGTGATGTTCAACAACAAGATCACGTTGGCGGAGACATTGGAAGCAACGAGAAACTTCGATGAAGAGAACGTGTTGAGCAGGGGAAGATATGGCCTTGTGTTCAAAGCCTCTTACCAAGATGGAATGGTTCTCTCCATTCGTCGCTTTGTTGTTGATGGGTTCATAGACGAGGGTACCTTCCGCAAAGAAGCAGAATCACTAGGCAAAGTGAAGCATAGAAACTTAACAGTTCTACGTGGTTACTATGCAGGCCCACCCGATGTGAGACTTCTTGTGTACGACTACATGCCAAATGGAAACCTAGGAACACTGCTTCAGGAGGCTTCTCAGCAAGATGGCCATGTGCTGAATTGGCCCATGCGTCATCTCATAGCACTAGGCATTGCTCGGGGGCTAGCTTTTTTGCACTCGGTGCCAATAGTTCATGGTGATGTGAAGCCTCAGAATGTTCTATTTGATGCTGATTTTGAAGCCCATTTATCTGAATTTGGGTTGGAACGGTTGACAATAGCAGCACCAGCAGAAGCATCATCATCTTCCACCCCAGTTGGGTCCTTAGGGTATGTTTCACCAGAAGCTGCATCCAGTGGGGTGGCTACAAAGGAGGGTGATGTGTATAGCTTTGGGATTGTGTTGTTGGAGATACTAACGGGGAAGAAACCGGTGATGTTCACGGAAGATGAGGACATAGTGAAGTGGGTGAAGAGGCAGCTACAAAGGGGCCAAATTTCGGAGTTGTTGGAGCCAGGGTTGCTTGAGCTTGACCCAGAGTCTTCGGAGTGGGAAGAGTTTTTGTTGGGTGTGAAAGTTGGTCTCCTATGCACAGCAACGGATCCTCTTGATCGACCATCCATGTCTGACGTTGCTTTCATGCTCCAAGGTTGCCGGGTTGGACCAGAAATTCCATCATCAGCAGATCCCACAACACTACCTTCCCCTGCTTGA 3402 0.4953 MEMATTVIFFSFTLVAFFATLTITFAQNNTALEIEALTTFKRNLHDPLGSLDGWDPSTPSAPCDWRGIVCQNNRVHQLRLPRLQLAGQLAPSLSNLLQLRKLSLHSNNLNASIPLSLTRCVFLRAVYLHNNKLSGHLPPPLLNLTNLQILNLARNLLTGKVPAHLSASLRFLDLSDNAFSGDIPANFSSKSQLQLINLSYNSFSGGIPASIGTLQNLQYLWLDSNHIHGTLPSALANCSSLVHLTAEDNALTGLLPPTLGGTMSKLLQVLSLSRNQLSGSVPASVFCNAHMRSVKLGFNSFTGLSAPQNGECDSVLEVLDIKENRIVHAPFPSWLTHASTSLKALDLSGNLFTGSLPVDVGNLSALEELRVGNNLLSGGVPRSIVNCRLLTVLDLEGNRFSGLIPEFLGELRDLKELSLAGNLFTGSVPSSYGALSALETLNLSDNKLTGVVPKEIMQLGNVSALNLSNNNFSGQVWSNIGDLTGLQVLNLSQCGFSGRVPATLGNLMRLTVLDLSKQNLSGELPLEVFGLPSLQVVALQENRLSGDVPEGFSSIVSLRYLNLSSNEFVGNIPITYGFLSSLTVLSLSHNGVSGEIPPEIGGCSQLEVLQLQSNSLEGNIPGDISRLSRLKELNLGHNRLKGDIPDEISECSALSSLLLDSNHFTGHIPGSLSKLSNLTVLNLSSNQLKGEIPVELSSIYGLEYLNVSSNNLEGEIPYMLGTRFNDPSVFAMNQGLCGKPLQRECANEKRRKRRRLIIFIGVAVAGLCLLALCCCGYVYSLLRWRKKLREGVTGEKKRSPTTSVGGGSRGSGENGGPKLVMFNNKITLAETLEATRNFDEENVLSRGRYGLVFKASYQDGMVLSIRRFVVDGFIDEGTFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLTIAAPAEASSSSTPVGSLGYVSPEAASSGVATKEGDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKRQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVAFMLQGCRVGPEIPSSADPTTLPSPA 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00549 1133 Pfam Leucine rich repeat 413 472 IPR001611 GO:0005515
Pumo10g00549 1133 Pfam Leucine rich repeat 168 227 IPR001611 GO:0005515
Pumo10g00549 1133 Pfam Leucine rich repeat 653 712 IPR001611 GO:0005515
Pumo10g00549 1133 Pfam Leucine rich repeat 581 640 IPR001611 GO:0005515
Pumo10g00549 1133 Pfam Leucine rich repeat 509 567 IPR001611 GO:0005515
Pumo10g00549 1133 SUPERFAMILY Protein kinase-like (PK-like) 818 1122 IPR011009 -
Pumo10g00549 1133 FunFam Leucine-rich repeat receptor-like protein kinase TDR 476 747 - -
Pumo10g00549 1133 FunFam Uncharacterized protein 263 475 - -
Pumo10g00549 1133 Gene3D Transferase(Phosphotransferase) domain 1 915 1119 - -
Pumo10g00549 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 189 - -
Pumo10g00549 1133 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 190 258 - -
Pumo10g00549 1133 MobiDBLite consensus disorder prediction 793 817 - -
Pumo10g00549 1133 Gene3D Ribonuclease Inhibitor 479 754 IPR032675 -
Pumo10g00549 1133 ProSiteProfiles Protein kinase domain profile. 838 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00549 1133 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Pumo10g00549 1133 PRINTS Leucine-rich repeat signature 438 451 - -
Pumo10g00549 1133 PRINTS Leucine-rich repeat signature 675 688 - -
Pumo10g00549 1133 SUPERFAMILY L domain-like 531 721 - -
Pumo10g00549 1133 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 360 1111 - -
Pumo10g00549 1133 Gene3D Ribonuclease Inhibitor 166 379 IPR032675 -
Pumo10g00549 1133 Gene3D Phosphorylase Kinase; domain 1 816 914 - -
Pumo10g00549 1133 ProSiteProfiles Leucine-rich repeat profile. 629 651 IPR001611 GO:0005515
Pumo10g00549 1133 SUPERFAMILY L domain-like 339 590 - -
Pumo10g00549 1133 SMART serkin_6 838 1110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00549 1133 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 915 1119 - -
Pumo10g00549 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
Pumo10g00549 1133 Gene3D Ribonuclease Inhibitor 380 478 IPR032675 -
Pumo10g00549 1133 SUPERFAMILY L domain-like 56 332 - -
Pumo10g00549 1133 Gene3D Ribonuclease Inhibitor 31 165 IPR032675 -
Pumo10g00549 1133 Pfam Protein kinase domain 840 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00549 1133 SMART LRR_typ_2 459 483 IPR003591 -
Pumo10g00549 1133 SMART LRR_typ_2 627 651 IPR003591 -
Pumo10g00549 1133 SMART LRR_typ_2 363 387 IPR003591 -
Pumo10g00549 1133 SMART LRR_typ_2 675 699 IPR003591 -
Pumo10g00549 1133 SMART LRR_typ_2 214 238 IPR003591 -
Pumo10g00549 1133 SMART LRR_typ_2 531 554 IPR003591 -
Pumo10g00549 1133 SMART LRR_typ_2 96 120 IPR003591 -
Pumo10g00549 1133 SMART LRR_typ_2 144 168 IPR003591 -
Pumo10g00549 1133 SMART LRR_typ_2 263 288 IPR003591 -
Pumo10g00549 1133 SMART LRR_typ_2 411 434 IPR003591 -
Pumo10g00549 1133 SMART LRR_typ_2 579 603 IPR003591 -
Pumo10g00549 1133 SMART LRR_typ_2 435 458 IPR003591 -
Pumo10g00549 1133 FunFam Putative LRR receptor-like serine/threonine-protein kinase 802 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00549 Pumo-Chr10 6951985 6955606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00549 3 1133 Receptor kinase-like Gene Family AT1G75640 64.273 0.0 1350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Pumo10g00549 Pkinase 4.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00549 - - gmx:100801571 1976.44