Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00545 ATGAAGATCCAGTGTGACGTTTGTAACAAAAACCAGGCCTCTTTATTCTGCACCGCCGATGAAGCCGCCCTATGCGACGGCTGCGACCACCGCGTCCACCATGCCAACAAGCTTGCCTCCAAACATCAACGCTTCTCCCTCACCCACCCCTCTGCAAAACATTTTCCTCTCTGTGATGTTTGCCAGGTGAAAAGAGCCTTTGTGTTTTGTCAGCAAGATAGAGCAATTCTGTGCAAAGAGTGTGACGTGCCTATTCATTCTGCCAACGACCTCACCAAGAAGCATGACAGGTTTCTTCTCACTGGGATCAAGTTCTCTGCTACTGCCACGCCTTATTCACCACCACCCAAGAAGAACAACCCTGTTCTCGATTCTTCACACCCACCTTCGAATTCTCCTTCAACTCCGTCACCGCCTAAGCCTGGCGGAAACTCCCTAACAAATGAAGAAGCTGGTTTCACAGGTAGCAGCATATCAGAGTACTTGATAAACACTATCCCAGGCATGAAGTTCGAAGATTTTCTCGATTCACATTCTGTTCCCTTTGCTTGCTCCAAGAATGGTGATGACATGCCGTCGCTGTTTGGTGAGGGAAACATGGTTTCGTTCTCAGCCGGTGGGATCTGGGTTCCTGAAGCACCATCTTCTTCTGAATATTGGGCACAAATGAACCAGCAGAGGGAAGGTAGCATTAGATCAAGTTTTGGGGATGATAACTTCATAGTTCCACAGATGAGTCCTCCCAGCAACGTGTCCAAGAGATCCAGGCTTCTATGGTAA 780 0.4846 MKIQCDVCNKNQASLFCTADEAALCDGCDHRVHHANKLASKHQRFSLTHPSAKHFPLCDVCQVKRAFVFCQQDRAILCKECDVPIHSANDLTKKHDRFLLTGIKFSATATPYSPPPKKNNPVLDSSHPPSNSPSTPSPPKPGGNSLTNEEAGFTGSSISEYLINTIPGMKFEDFLDSHSVPFACSKNGDDMPSLFGEGNMVSFSAGGIWVPEAPSSSEYWAQMNQQREGSIRSSFGDDNFIVPQMSPPSNVSKRSRLLW 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00545 259 MobiDBLite consensus disorder prediction 110 150 - -
Pumo10g00545 259 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pumo10g00545 259 CDD Bbox1_BBX-like 5 47 - -
Pumo10g00545 259 Gene3D Classic Zinc Finger 1 95 - -
Pumo10g00545 259 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pumo10g00545 259 MobiDBLite consensus disorder prediction 231 253 - -
Pumo10g00545 259 CDD Bbox1_BBX-like 57 100 - -
Pumo10g00545 259 MobiDBLite consensus disorder prediction 231 259 - -
Pumo10g00545 259 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Pumo10g00545 259 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Pumo10g00545 259 FunFam B-box zinc finger protein 21 1 98 - -
Pumo10g00545 259 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 248 - -
Pumo10g00545 259 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pumo10g00545 259 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00545 Pumo-Chr10 6903446 6905237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00545 1 259 C2C2-CO-like Transcription Factor Family AT1G75540 40.950 1.71e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pumo10g00545 zf-B_box 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00545 - - gmx:100785978 438.343