Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00543 ATGGCTCGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACGAACCGCCAGGTCACTTACTCTAAACGACGGAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGAAAACTCCACGAGTACATCAGCCCCTCCACCTCAACAAAGCACTTCTTCGATCAATACCAGATGACCCTAGGAGTTGATCTATGGAACTCTCATTACGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGAGGTCAATAGGAATCTTCGTAAGGAGATTAGGCAGAGGATGGGAGATTGTCTGAACGATCTCAGCATGGAAGATCTCAAGCTCCTTGAGGAAGAAATGGACAAGGCCGCCAAGGTTGTTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAAAAGTTTAATAACGAGAAAGAAGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGCATTGATAGATAATGGAGGGGAGTATGAGTCTGTGATCGGATTCTCAAATTTAGGTCCACGCATGTTTGCATTGAGCCTACAGCCAAGCCATCCTAATCCCAGTGCCCATAGCGGAGCAGCCTCTGATCTTACCACTTACCCCTTACTTTTCTAG 687 0.4571 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKHFFDQYQMTLGVDLWNSHYENMQENLKKLKEVNRNLRKEIRQRMGDCLNDLSMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLDARAEDPRFALIDNGGEYESVIGFSNLGPRMFALSLQPSHPNPSAHSGAASDLTTYPLLF 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00543 228 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Pumo10g00543 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo10g00543 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo10g00543 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo10g00543 228 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo10g00543 228 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pumo10g00543 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo10g00543 228 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo10g00543 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo10g00543 228 Coils Coil 151 171 - -
Pumo10g00543 228 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Pumo10g00543 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo10g00543 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Pumo10g00543 228 Coils Coil 77 111 - -
Pumo10g00543 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00543 Pumo-Chr10 6873516 6877861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00543 1 227 MADS-box Gene Family AT3G54340 57.143 1.47e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo10g00543 DctP 0.00017 CL0177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00543 K09264 - gmx:547720 419.853