Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00539 ATGGCTGGGTTCTTCTCTCTAGGTGGAAGTGGAAGGGGAGGCCCACAAAACAAGGAAGAAGAGGAAGCAGAAAAAAGAGTTAACAATAACAACAACAGCGGGAATAACCTATTATTGTTCAGGAACGAGGAGATCTACAACAAAGGGTTCGAGATATGGCCACAGTCGTATCAGCATCAGCATCAGCATCACCAAAACTTGAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAGCGTGAACGAGGAAGAGGAGGTTTCATTCTGCGTGTCGGATGAGTCTACGAGATTTGGATTAACTGTCATGAAGTCTGGAGGAAGCAGCAGCAGCGGTGGCATGAACTGTCAGGACTGTGGGAACCAAGCGAAGAAAGACTGTTCGCATCTCAGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCCGCAGCCAAGCGCCGTGAACGACAGCAACAACTCGCTGCGTTGCAGCAACACCCACAATTGCGCGGAGACAATATTCCTAAACGACATCATAGAGACACTACTACTCAACTTGCCTCCGCTCCACAACCCATCACAGGGTTAGAGCTGGGGCAATTCCCACCTGAAGTGAGCACTTCGGCGGTGTTTCGGTGTGTGAGAGTGAGCGCAGTGGACGCTTCAGATGAACAGTGTGCGTATCAAACCTCTGTCAACATCGGAGGACATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCTGAAAGTTCTTACACTAGTGCAGCAGCTGAGGGTTCCTCCGGTGGTGAACCTCAACAACTTGGTTTAATAACCGCCGCAACCACCAGTGGGAACAACCCATTTGACCCTTCACTTTACCCAGCTCCGTTGAATGCTTTCATGGCTGGTACGCAATTCTTCCAACCCCCAAGGTCCTAA 936 0.5032 MAGFFSLGGSGRGGPQNKEEEEAEKRVNNNNNSGNNLLLFRNEEIYNKGFEIWPQSYQHQHQHHQNLSNYFAFGVGPSRRSVNEEEEVSFCVSDESTRFGLTVMKSGGSSSSGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQHPQLRGDNIPKRHHRDTTTQLASAPQPITGLELGQFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTSAAAEGSSGGEPQQLGLITAATTSGNNPFDPSLYPAPLNAFMAGTQFFQPPRS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00539 311 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 297 IPR007818 GO:0003700|GO:0006355
Pumo10g00539 311 MobiDBLite consensus disorder prediction 1 34 - -
Pumo10g00539 311 NCBIfam LRP1 C-terminal domain 205 253 IPR006511 -
Pumo10g00539 311 NCBIfam putative zinc finger domain, LRP1 type 116 158 IPR006510 -
Pumo10g00539 311 Pfam Domain of unknown function (DUF702) 114 254 - -
Pumo10g00539 311 MobiDBLite consensus disorder prediction 161 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00539 Pumo-Chr10 6842410 6843877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00539 1 311 C2H2 Transcription Factor Family AT1G75520 45.763 4.69e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pumo10g00539 DUF702 2.6e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00539 - - gmx:100818588 438.343