Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00530 ATGCTGAAATCAGGCATGGGAATTGAGGAGAGAAAGCAGGTGAAGAAGCCAGCACAGGCAAGCTCCAGAAAAGGGTGTATGAGAGGTAAAGGAGGTCCTGAGAATGCGAGTTGCACCTACAAAGGTGTGAGACAGAGAACCTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAATCGAGGTGCTAGACTCTGGCTCGGGACATTTGAGACCTCTCATGAGGCTGCTTTGGCTTATGATGCTGCAGCACGTAAGCTTTATGGCTCTGATGCCAAACTCAATTTACCAGAACTCTCTATGAAATCTCATCAATCTCAATCTCCACCACCACCTTCTGCTACCAACACTCAAATGGACCACCTTCAGCAGCCACAGATTCAAAACAACATAGACATGGCTACATGTTCTAATTTCAACACCAATCATGCTGTCTCCATTGGCCCAATTTACACCAGTGACTCCATCGTGTCTCTTCCCTTGGATACCAATCCCAAGCCGGTTGTGGAGAATGATGGGGAGTTTCATCCTTCGTGGGGGACAATGAACGATACTTTGCCAGTTTTTGATGATTCCATTTGGGCTGAAGCTGCTATGTCCCTAGACTTTCCTCTAATTGCAGCAGAGACTGGGATTTACACATCCTGGAACAACAACTTGGCAGATGTGGGTGTGTGGGACTCTCTGCAAACCCCATGGTGCATGTAA 705 0.4766 MLKSGMGIEERKQVKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELSMKSHQSQSPPPPSATNTQMDHLQQPQIQNNIDMATCSNFNTNHAVSIGPIYTSDSIVSLPLDTNPKPVVENDGEFHPSWGTMNDTLPVFDDSIWAEAAMSLDFPLIAAETGIYTSWNNNLADVGVWDSLQTPWCM 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00530 234 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Pumo10g00530 234 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Pumo10g00530 234 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Pumo10g00530 234 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Pumo10g00530 234 MobiDBLite consensus disorder prediction 1 17 - -
Pumo10g00530 234 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Pumo10g00530 234 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Pumo10g00530 234 MobiDBLite consensus disorder prediction 1 38 - -
Pumo10g00530 234 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Pumo10g00530 234 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Pumo10g00530 234 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Pumo10g00530 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 13 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00530 Pumo-Chr10 6700613 6701317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00530 15 231 AP2-EREBP Transcription Factor Family AT1G75490 47.489 2.45e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo10g00530 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00530 - - gmx:100797850 383.645