Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00522 ATGTATCCCAACCAAGCCTTTTCTTCAGGGTCCTATGCAGAGATGATGTCTGGGACTTCTCTGTTACCTCATGACTACAGTGAATCCGTAGGGGTACAAAATGAGGTGAAGTTTATCACAGCTATGGGTGAGACAGTGACTATGCAATCTATTAATGGTCATTCCAATGCTGCAACTGGTGATCCATCATGCAACTCTTTTGCCGGGGGTTCCCACGTTGTTTCAAGGACACAAATGGGAATGGTAGATAGTGAGCAAAACATGCAGTGCCAGGGCCTATCTCTCAGTCTCGGGACACTCATGCCTTCTAATTCATCTGTCCCTCCATTTCAATACCAATATCACGACACTGGTCTCTTACCACTAATGAATAATGATTTTCCAAATCTAAAGGGAACCATGTCTCTCAAAGATGATGAGGCCAATAACCTACATAGGGACTTGAGAAGTGCTGAGTGCATGGCATCTGTGTCTTCTGGAGGCTTTCATGACATGATAAAAAAGGAGGGTTTTTACAACCCCCACCCCTCAATGCCCTCTGATCTACCAGGTTACTCGAACAATATTATAAACTCCCAATACCTTAAGGCGGCACAAGAGTTGCTCGATGAATTAGTTAGTGTCCGAAAGGCTTTGAAGCAATCTGGAATGGATAAACAAGAAAATGGCCGTGACATTGGATTAGATGGCTCTAAAGATTCTGATGGAAAATCTACCAGCCAATCTTTGCAAATGTCTTCAGGCCCTAATGGTTCCACTGCCAATGCTTCTAGTGAACTATCATCTGCAGAACGACAGAACTTTTTGGACAAGAAAACAAAGCTTTTGTCCATGTTGGATGAGGTAGATAAGAGATACAGACAGTACTGCCAACAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCTGGATGTGGAGCAGCAGAACCATATACGACACTTGCTTTAAGAACAATTTCTCGCCACTTTCGGTGTTTGCGTGATGCCATCAGTGGCCAAATTCAGGTGACACAAAGAAGCCTTGGGGAGCAAGAGGGAATACCCCGTCTCCGCTATGTGGATCAGCAACTTAGACAACAAAAGGCCCTTCAGCAACTTGGTGTAATACGACAAGCTTGGAGGCCTCAGAGGGGTCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGACAAACAGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATCAATGCAAGGGTGCGTCTCTGGAAGCCAATGGTTGAGGAAATGTACAAAGAGGAGTTTGGAGACTCCCAGATGAACTGCAGCCTTTCATCTGAGAACACGGTCAAAGGGTGA 1386 0.4481 MYPNQAFSSGSYAEMMSGTSLLPHDYSESVGVQNEVKFITAMGETVTMQSINGHSNAATGDPSCNSFAGGSHVVSRTQMGMVDSEQNMQCQGLSLSLGTLMPSNSSVPPFQYQYHDTGLLPLMNNDFPNLKGTMSLKDDEANNLHRDLRSAECMASVSSGGFHDMIKKEGFYNPHPSMPSDLPGYSNNIINSQYLKAAQELLDELVSVRKALKQSGMDKQENGRDIGLDGSKDSDGKSTSQSLQMSSGPNGSTANASSELSSAERQNFLDKKTKLLSMLDEVDKRYRQYCQQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVIRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSQMNCSLSSENTVKG 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00522 461 CDD homeodomain 374 435 IPR001356 GO:0003677
Pumo10g00522 461 MobiDBLite consensus disorder prediction 215 232 - -
Pumo10g00522 461 Pfam Homeobox KN domain 391 430 IPR008422 GO:0003677|GO:0006355
Pumo10g00522 461 FunFam BEL1-like homeodomain protein 4 377 439 - -
Pumo10g00522 461 Gene3D - 371 448 - -
Pumo10g00522 461 Coils Coil 195 215 - -
Pumo10g00522 461 ProSiteProfiles 'Homeobox' domain profile. 371 434 IPR001356 GO:0003677
Pumo10g00522 461 SMART HOX_1 374 438 IPR001356 GO:0003677
Pumo10g00522 461 SMART prehox3 183 333 IPR006563 -
Pumo10g00522 461 Pfam Associated with HOX 189 332 IPR006563 -
Pumo10g00522 461 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 448 - -
Pumo10g00522 461 SUPERFAMILY Homeodomain-like 375 442 IPR009057 -
Pumo10g00522 461 MobiDBLite consensus disorder prediction 215 263 - -
Pumo10g00522 461 MobiDBLite consensus disorder prediction 233 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00522 Pumo-Chr10 6604876 6608075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00522 32 456 Homeobox Transcription Factor Family AT1G19700 47.085 2.14e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo10g00522 POX 3.1e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00522 - - gmx:100791641 822.387