Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00521 ATGTCCAACTCCATTACTCATCAAAACCAATTTGAGAACCAAGAGCTTGATGCTTATGGCTCTTCTATGAGGCACAACAATGCATTTCCTGAGGCCTTGGGAGCATTTCCTAGCATTGGTGTTGCTGAGGGCTCTGAGATAAGCCACACAAGGCATTTGATGGATCTTCTTGGTGCAGCTAATGAGAGCAATCACCACCACCAACCTCAAGGGCTTTCCCTCTCTTTAGGCTCTCACATGCTTGTTCCTTCTGATGAATACAGGCATCATCAAAGACCCTTAAACCCGGCTCTCATCAACCCCAATTACTTCATGTCTGGTGGACAAGAGGCCACACGTGAGCCTTGTAATCCACCTGTGGAGCATATAACCAGTGACTACTTTTTCAACACTGCCAGTGGCACTTTTGCTTCCTCTTCTGCCCCTTTCAACCGTTCTCCTAATTCCACCTCTTATGCTGCTGAGTCTTTTGCTGCTATCATTGGGAACTCCAGATACCTCAAACCGGTCCAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGGTTGATAGAATCAATGAAAAGTATGCTGAGAAGTTGTTTCGTGGGAGTAGAGCAAGTGCTAGAACACTTTCTTCAGAGTTGAAGGCAGAGTTGAGGAATAATGGACACTTATTGGCTGAAAAACATGAACATCAAATCAAAATTGCAAGGTTGATTTCTTTGTTGGATGAGGTTGAGGGCAGGTGTGAGAAATACTACCATCAAATGGAAGAAGTGGTTTCATCCTTTGAAATGATAGCAGGTTTGGGAGCTGCCAAGAGTTACACTGCTTTGGCACTCCAAGCCATGTCAAGGCATTTCTGTAGCTTGAGAGATGCCATATTGTCACAAATAAATGCTGAGAAAAGAAAACTCTTTCAGGATTTACCTAAGATCAGTAGTGGGTTGTCTCAACTAAGCTTGTTTGATAGAGACAATAGACAGAGTAGAATGTCTCTCCAACAACTTGGGGTGATCCAAAGCCAACGCCAAGTTTGGAGACCCATCAGAGGGTTGCCTGAAACCTCTGTGGCAATTCTTCGATCTTGGCTCTTTGAGCACTTTCTCCACCCTTATCCTAATGATTCTGAAAAGTTAATGCTGGCATCTCAGACAGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTAGAGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAGGAGTTTGGAGAGTCTTCCGAAGACTCCAACCCGGCGGCTGGTAACAACTACTTGACGAGGGAAGATACCACAGATTGTGTAGAAGATTGA 1323 0.4376 MSNSITHQNQFENQELDAYGSSMRHNNAFPEALGAFPSIGVAEGSEISHTRHLMDLLGAANESNHHHQPQGLSLSLGSHMLVPSDEYRHHQRPLNPALINPNYFMSGGQEATREPCNPPVEHITSDYFFNTASGTFASSSAPFNRSPNSTSYAAESFAAIIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYAEKLFRGSRASARTLSSELKAELRNNGHLLAEKHEHQIKIARLISLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKSYTALALQAMSRHFCSLRDAILSQINAEKRKLFQDLPKISSGLSQLSLFDRDNRQSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPAAGNNYLTREDTTDCVED 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00521 440 ProSiteProfiles 'Homeobox' domain profile. 362 403 IPR001356 GO:0003677
Pumo10g00521 440 SMART HOX_1 343 407 IPR001356 GO:0003677
Pumo10g00521 440 SMART prehox3 155 293 IPR006563 -
Pumo10g00521 440 MobiDBLite consensus disorder prediction 412 440 - -
Pumo10g00521 440 Pfam Associated with HOX 161 291 IPR006563 -
Pumo10g00521 440 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 421 - -
Pumo10g00521 440 CDD homeodomain 343 404 IPR001356 GO:0003677
Pumo10g00521 440 SUPERFAMILY Homeodomain-like 349 410 IPR009057 -
Pumo10g00521 440 Pfam Homeobox KN domain 360 399 IPR008422 GO:0003677|GO:0006355
Pumo10g00521 440 Gene3D - 338 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00521 Pumo-Chr10 6600326 6602858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00521 138 422 Homeobox Transcription Factor Family AT2G16400 48.148 3.39e-81 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo10g00521 POX 6.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00521 - - gmx:100792161 776.933