Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00493 ATGGGTTGGACACGAGAAGAGAATAGACGTTTTGAGGATGCTCTTGCGGTTCATGGCCCTGACGACCCCAATCGGTGGCAACACGTAGCCAACGCGGTGGGTGGAAAATCCGTAGAAGAGGTGAAAATGCACTATGAGATCCTCAAGGAAGATGTCATTCGAATAGAGCGTGATCAAATCCCACTTCCCAGGTACAGAGGAACTGGCATCAACGGAAGACATATTGAGAGTGAGCAAAGTTCAGTTTTGGGCCAGGAGGATTGGAAGGATCTGCTGGGCCAAGGTGGATTCTCTCAAGATGCTTTGGACAAGGCCCAGATGGCTTTAGGTGCTGCTTCTGCCCAAGCAGCTGTGAATGATTATTTTGGAGATGGCGACTCTTCTAACTCTCCTCCTAACGACGATGCCGACGAAGGAGAAGGATCATCCTTGGCTGACTTTTTAGACGCTGCTGACAATACAAGCAACAATACGGGAGTTTCACCCACAGGGTCAACAGTAGATTCACCTGTTGGGGCACCAGAAGATTTACCTGCAGATGACGATGATTCAGATGATTCTTTCTCACCTGCAGGGGCACCACTAAATTCACCTAATGGGGCACCTAATCAAGCGCCAACCAATACGCCAATGGAAGCACCAGCAAACAGTGCTCCAACAGAAGCACCTGAATTGGCACCCACAAATGCACCAATAGAAGCACCTGAATTAGCACCCTCAAATGCACCAACAGAGGCACTTGAATCAACACCCACAAATGCACCAATAGAGGCACCTGAATTGGCACCCATGACAAATGCACCAACAGAAACACCTAAATTGGCACCAACAACAAATGCACCTGTGCAAGCACCTAGTGCTGAAGAGGCTGACGAAGGTGAATTGGCACCAACAAATGCACCTGCAGGGGAACCAGATGATGAAGACGAGTTTGATGATTCTGAATCAACACCCACAAGTGCTCCCACAGAGGCACCTGAAGCGGAGCTAGCAGACGAGTCTGATGACGAAGCATAA 1017 0.4916 MGWTREENRRFEDALAVHGPDDPNRWQHVANAVGGKSVEEVKMHYEILKEDVIRIERDQIPLPRYRGTGINGRHIESEQSSVLGQEDWKDLLGQGGFSQDALDKAQMALGAASAQAAVNDYFGDGDSSNSPPNDDADEGEGSSLADFLDAADNTSNNTGVSPTGSTVDSPVGAPEDLPADDDDSDDSFSPAGAPLNSPNGAPNQAPTNTPMEAPANSAPTEAPELAPTNAPIEAPELAPSNAPTEALESTPTNAPIEAPELAPMTNAPTETPKLAPTTNAPVQAPSAEEADEGELAPTNAPAGEPDDEDEFDDSESTPTSAPTEAPEAELADESDDEA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00493 338 MobiDBLite consensus disorder prediction 122 136 - -
Pumo10g00493 338 MobiDBLite consensus disorder prediction 148 168 - -
Pumo10g00493 338 FunFam Transcription factor SRM1 1 62 - -
Pumo10g00493 338 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Pumo10g00493 338 MobiDBLite consensus disorder prediction 270 284 - -
Pumo10g00493 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 74 IPR044636 GO:0003700
Pumo10g00493 338 SMART sant 3 51 IPR001005 -
Pumo10g00493 338 ProSiteProfiles SANT domain profile. 1 53 IPR017884 -
Pumo10g00493 338 MobiDBLite consensus disorder prediction 190 215 - -
Pumo10g00493 338 Gene3D - 2 50 - -
Pumo10g00493 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Pumo10g00493 338 MobiDBLite consensus disorder prediction 120 338 - -
Pumo10g00493 338 Pfam Myb-like DNA-binding domain 3 45 IPR001005 -
Pumo10g00493 338 CDD SANT 3 49 IPR001005 -
Pumo10g00493 338 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00493 Pumo-Chr10 6284470 6288264 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo10g00493 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00493 - - gmx:102662129 273.092