Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00473 ATGACGGAACCTCAGAATCCTTCACCATTGACACATTCTTCAGCGTTAGAAATCGCACCTCAACCTCAACCACTGCAACCTCCCAAAAAGAAACGAAGCCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACACTGTTGGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAAGGATTCCAACGCGACCAGAACCTGCAGCTTCACCGGCGCGGCCACAACTTGCCGTGGAAGCTGCGGCAGCGAGGGAGCAAGGAACCGCGCAAGAAAGCCTACGTGTGTCCGGAGCCATCCTGCGTCCACCACAACCCCGCCAGAGCGCTCGGCGACCTCACCGGCATCAAAAAGCACTTCTGCAGAAAACACGGTGAGAAAAAGTGGAAATGCGAACGCTGCTCTAAGAAATACGCCGTACACTCCGATTGGAAGGCGCATATGAAAACTTGCGGCACCAGAGAGTACCGATGCGACTGCGGCACCTTGTTCTCTAGGAGGGATAGTTTCATCACGCACAGAGCTTTTTGCGATGTGTTAGCGCAAGAGAGCGCGAGGGCCCAGGTCCAAGCCCAAGCCCAAGCCCAAACCCAGGCCCAAGGTGTTAGCAGTAGCAACGTGGTTGCGGCTTCTTCGCCGCCTACGCCTCCACTTACTCCCTCTGCGTCTGTGGTATCTCCAACTTTGTCCATTCAGAGCTCAGAAATTCCGGAACACCCATCAACGAAGCTGTCACCGACGTCTCCAAACGCAACGTGTTTCGTGACAAGCAGCACCCCTTCCAGTTCCACTACTTGCACCACTGTTTTTGCAAGTGTGATGACACCGTCCACAACAGCAACTCCTTCACAATCACAGTCACCATCAGCATCAACATCCTCATTCTCCAACCTCATGTCAAACTTGGCTCGCTCGGATAACCGGAATGCCATTATGAGAGAACCCACATCCCTCTCCCTCTCCACACCACTCTATCTCTCCAACAACGACCCTCCTCACTACACTACTGCATCACCCCAACCTGCAGCATTATCTGCCACTGCACTCCTCCAAAAAGCAGCTCAAATGGGTGCATCAAATGCGTCCCTTCTTCGTGGCTTAGGCTTAGCAACAACATCATGCTTCGGGAAAGACGAGGGTACAACAACACTACAATGGAACGGCCAAGTAAAGCAAGAGAATCATCCAGTGGTGGATAACCTTGGGCTTGGGCTTCCCTGTGGGAGTGGGGGTGTGTCAGATGTGATGATGGGCCAGCCCATGACCCGTGATCTTCTTGGTCTGAGCATCGGTGGCGGAGCAAGCAGGGGTGGTCTCTCTGCTTTGCTCAATTCATTTGGAGGGAACTTTGATTCACCCGGTGAGGGAGGAGTTCAACGGTAG 1398 0.5343 MTEPQNPSPLTHSSALEIAPQPQPLQPPKKKRSLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEPRKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVHSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDVLAQESARAQVQAQAQAQTQAQGVSSSNVVAASSPPTPPLTPSASVVSPTLSIQSSEIPEHPSTKLSPTSPNATCFVTSSTPSSSTTCTTVFASVMTPSTTATPSQSQSPSASTSSFSNLMSNLARSDNRNAIMREPTSLSLSTPLYLSNNDPPHYTTASPQPAALSATALLQKAAQMGASNASLLRGLGLATTSCFGKDEGTTTLQWNGQVKQENHPVVDNLGLGLPCGSGGVSDVMMGQPMTRDLLGLSIGGGASRGGLSALLNSFGGNFDSPGEGGVQR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00473 465 MobiDBLite consensus disorder prediction 1 20 - -
Pumo10g00473 465 MobiDBLite consensus disorder prediction 227 254 - -
Pumo10g00473 465 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Pumo10g00473 465 Gene3D Classic Zinc Finger 112 193 - -
Pumo10g00473 465 MobiDBLite consensus disorder prediction 282 301 - -
Pumo10g00473 465 Gene3D Classic Zinc Finger 38 105 - -
Pumo10g00473 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Pumo10g00473 465 MobiDBLite consensus disorder prediction 1 41 - -
Pumo10g00473 465 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 433 IPR031140 -
Pumo10g00473 465 FunFam protein indeterminate-domain 12-like 37 105 - -
Pumo10g00473 465 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Pumo10g00473 465 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Pumo10g00473 465 MobiDBLite consensus disorder prediction 203 217 - -
Pumo10g00473 465 MobiDBLite consensus disorder prediction 203 254 - -
Pumo10g00473 465 Pfam Zinc-finger of C2H2 type 58 80 - -
Pumo10g00473 465 SMART c2h2final6 134 154 IPR013087 -
Pumo10g00473 465 SMART c2h2final6 99 129 IPR013087 -
Pumo10g00473 465 SMART c2h2final6 58 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00473 Pumo-Chr10 6119974 6123252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00473 29 433 IDZ Gene Family AT5G66730 50.667 1.36e-132 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo10g00473 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00473 K25869 - gmx:100800089 691.804