Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00461 ATGGCAAGTGGGTTTGGGGAATCAACTGGGAGGTCACCCCCAAGCCCTTCCTACTTCAACAACAATAACAACAATGATGCTGCCGATTTTGAATGCAACATTTGTTTCGAATTAGCGCAAGACCCGATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAGTGGCTTCACTTTCACTCGCAGTCGCGAGAATGCCCAGTGTGCAAGGCTCTCGTGGAGGAGGAGAAGCTGGTTCCCTTGTATGGGAGAGGGAAGACATCGACTGATCCAAGATCAAAATCTATTCCGGGCATTAACATTCCGCATCGTCCGGCTGGTCAGAGGCCTGAAACTGCTCCTCCACCTGAAACAAATCATTTTCATCAACATGGGTTTGGATTTATGGGTGGCTTGGGTGGATTTGCGCCACCGCCAATGGCAACAACTAGATTTGGGAATTTTGCATTGTCCGCAGCTTTTGGTGGTTTTATACCGTCCTTATTCAACTTTCAGTTGCATGGGTTTCATGATGCGGCCATGTATGGGGGAGGGGCTGGTTTTCCTCTTGGATTTTCTAATTCATTTCATGGTGTCCATGCTCATGGATTCCCTCTGCACACCCATCAAAGGCAACAAGATTATTATTTGAAGAAGCTGCTTCTGTTTGTTGTTTTCTGTGTTGTTCTTGCTTTTATATGGCAATAG 696 0.4598 MASGFGESTGRSPPSPSYFNNNNNNDAADFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGINIPHRPAGQRPETAPPPETNHFHQHGFGFMGGLGGFAPPPMATTRFGNFALSAAFGGFIPSLFNFQLHGFHDAAMYGGGAGFPLGFSNSFHGVHAHGFPLHTHQRQQDYYLKKLLLFVVFCVVLAFIWQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00461 231 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Pumo10g00461 231 MobiDBLite consensus disorder prediction 1 20 - -
Pumo10g00461 231 SMART ring_2 32 72 IPR001841 -
Pumo10g00461 231 CDD RING-HC_AtRMA-like 30 74 - -
Pumo10g00461 231 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Pumo10g00461 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Pumo10g00461 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 21 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pumo10g00461 231 MobiDBLite consensus disorder prediction 86 117 - -
Pumo10g00461 231 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Pumo10g00461 231 SUPERFAMILY RING/U-box 28 85 - -
Pumo10g00461 231 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00461 Pumo-Chr10 5992103 5993459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00461 20 230 C3H Transcription Factor Family AT2G23780 59.174 6.11e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00461 K10666 - gmx:100527488 414.461