Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00458 ATGGGTGGTTGTCTTAGCAAAAATTTTGAAAGCTCCAAGCTTAAAAGTTCAGAAGTACATGATCATGCAAATTTGCCATCAACTTCAGGGATTGCAATTCACAATCAGAAGAAGATGAACAACTTGCCAGAGCATGGAAATGGAAACAACGTCAACCAATGTTGTCAACCAATGGGGTCCAGGATTTGTGCTGGTTGCAATGCTGAGATTTATGGGCGACGTCTAAGTTGCATGAATGCAACATGGCATCCTGAATGCTTCCGCTGCCGAGCTTGCAACTTGCCAATACCTGATTTTGCGTTCTCTTCATCTGAAGGTCACCCTTACCATGAATCATGCTGGAAGGAAATGTACCATCAAAAATGTGATGTTTGCAAGCACAAACTTTCAACAAACCCGGCAACCGGTCAGCTCGAGTGTAGGATGCATCAATTTTGGAACCAGAAGTTTTGCACTTCCCATCTAGATGACGGTACACCCCGCTGTTGCAGCTGTCAGCGATTAGAGCCACGAGGGACAGGATATGTTGATCTTGGTGATGGCCGGAAACTCTGCTTAGAGTGTCTGGACTATTATGCAATTATGGATACCAACAAATGCCAACCCCTTTATATTGACATACAGAAATTTTACGAAGGTCTAGATATGAAACTGGACGAGCAAATTCCAGTGTTCCTAGTTGAAAGACAAGCACTGAATGAAGCAAGAGCAGGGCAGAAGAATGGCAACCATGACATGCCTGAGGCTGAGACCAGAGGAATTTGCCTCTCAGAAGAACTGACCATCAACAGTATCTCTAAGCGACCTGGACTAGGGACAAGAAATAGAACAGCTGACATGAGAACACTACCCTACACACTTACTCGACGACACTGTGAGGTGACTGCAATACTCATTTTGTACGGTCTTCCAAGGTTGCTTACTGGATCACTCCTGGCTCATGAAATGATGCATGCATGGTTCAAACTTCAAGGTTATCAGAAGCTAGATCCAGTTGTTGAAGAAGGCATGTGTCAGGTTTTGGCTCTTATGTGGTTGGAGTCTGAGCTTTCTTCTTCTGCTTCATCTTCATCTTCATCCAATGTATTTGAGGGTATGTTTGGGAGGTACTGCAAGAACATCATTGAATTAGACATGAGCCCTATTAAGCAGTGCGCAACTCTGACTGAAATCTTGAAGCTACCTCAAATGGCCAAAAGCAATGGCTGCAGCTTCTCTAGTGTGTCTTCAGTTGCTGTCTTCTCGAGTGCCATTTTTGTTGTAACATTGATTTTGGTTCGTCTCCTTTATGTCATATATTGTAGCACCAGGCCCTTGAGCAAAAGGGCTTTAAAACCTGTCAGTACCCTTATTATTTTAGGATCAGGTGGTCATACTGCTGAGATGCTTAATCTATTGGCAGTGTTACAGAAAGATAGGTTCAAGCCAAGATTCTACATTGCTGCTGCTACTGATAATATGAGTCTTCAAAAAGCTCAGTTGTTGGAGAATTCCTTGGCTGCTGAGAATGCAACAAGGGTAACTGATACTGCACAGTTCATGAAGATATATCGGAGTAGGGAAGTTGGTCAATCATATATAACCTCAATTTGGACTACTTTAATTGCAATGGTGCATGCACTATGGCTAATGATTAAAATTAGACCTGAAGTGATACTTTGTAATGGACCTGGAACTTGCATTCCTCTATGTGCAATTGCATTCATATTTAAGATACTGGGAATCAGATGGTCATCAATTTTCTATGTTGAGAGTATTGCAAGAGTGAGAAGGCTCTCCTTGAGTGGCCTGCTCCTGTACAAGTTGCGGATGGCTGATCAACTTTTTGTTCAGTGGCCACAGCTGCAACGACAATATCCCCGTGCTATGTATGTTGGTCGACTCATGTAA 1890 0.4291 MGGCLSKNFESSKLKSSEVHDHANLPSTSGIAIHNQKKMNNLPEHGNGNNVNQCCQPMGSRICAGCNAEIYGRRLSCMNATWHPECFRCRACNLPIPDFAFSSSEGHPYHESCWKEMYHQKCDVCKHKLSTNPATGQLECRMHQFWNQKFCTSHLDDGTPRCCSCQRLEPRGTGYVDLGDGRKLCLECLDYYAIMDTNKCQPLYIDIQKFYEGLDMKLDEQIPVFLVERQALNEARAGQKNGNHDMPEAETRGICLSEELTINSISKRPGLGTRNRTADMRTLPYTLTRRHCEVTAILILYGLPRLLTGSLLAHEMMHAWFKLQGYQKLDPVVEEGMCQVLALMWLESELSSSASSSSSSNVFEGMFGRYCKNIIELDMSPIKQCATLTEILKLPQMAKSNGCSFSSVSSVAVFSSAIFVVTLILVRLLYVIYCSTRPLSKRALKPVSTLIILGSGGHTAEMLNLLAVLQKDRFKPRFYIAAATDNMSLQKAQLLENSLAAENATRVTDTAQFMKIYRSREVGQSYITSIWTTLIAMVHALWLMIKIRPEVILCNGPGTCIPLCAIAFIFKILGIRWSSIFYVESIARVRRLSLSGLLLYKLRMADQLFVQWPQLQRQYPRAMYVGRLM 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00458 629 Pfam LIM domain 63 115 IPR001781 -
Pumo10g00458 629 Gene3D Cysteine Rich Protein 58 121 - -
Pumo10g00458 629 Gene3D Glycogen Phosphorylase B; 450 629 - -
Pumo10g00458 629 CDD LIM_DA1 63 113 - -
Pumo10g00458 629 Pfam Oligosaccharide biosynthesis protein Alg14 like 450 628 IPR013969 GO:0006488
Pumo10g00458 629 ProSitePatterns LIM zinc-binding domain signature. 63 96 IPR001781 -
Pumo10g00458 629 SMART lim_4 62 113 IPR001781 -
Pumo10g00458 629 Pfam Protein DA1 213 360 IPR022087 -
Pumo10g00458 629 FunFam UDP-N-acetylglucosamine transferase subunit ALG14 isogeny 449 629 - -
Pumo10g00458 629 ProSiteProfiles LIM domain profile. 61 120 IPR001781 -
Pumo10g00458 629 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 51 87 - -
Pumo10g00458 629 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 88 135 - -
Pumo10g00458 629 PANTHER PROTEIN DA1-RELATED 2 37 382 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00458 Pumo-Chr10 5950751 5958159 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo10g00458 Alg14 1.1e-64 CL0113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00458 - - mnt:21404090 426.017