Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00443 ATGTATACTACTTCGCACACAGTAATGCCAACCTTTGCACCCTTGCCAGAACCAGACCTCTCCTTAAACATAAGCCCACCCTTCACTTCAGATTCTGACGCCAAACAAGTGGGAACAAGCTGCAACGGGTTAGCATTAACTACCAAAACACTTTACAAGGATATGTGCTCAACCTCTAATTCTGGAAGCAGTGGAAGCGATTTAAGCCACGAAATTGGTTTTTGCCACACGGAGACTAGTGTCTACAACCTGGGCCATCGTGAACCGACACTGAGCTTAGGCTTCCAAACAGCAAATTTGAATCCTTATCCTGTCCAAGGTGCACTCTCGAGAAACTTCAATCACCTCCACAACTACCAACCTCACACCAATACCCTCGATTTTAAACGAAATGCTAGAGTCATTCACGGAGTGAAAAAAAGCATAAGAGCTCCTAGAATGCGATGGACTACCACCCTCCATGCTCATTTCGTTCATGTGGTTCAGCTTCTTGGTGGTCATGAAAGGGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACTCTATCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCTCTGACAAAGGCAGCGCAGGTTATGGGCAGACAGGTATAGGGTCGAGCCAAAAGCGAGGGAATTGTCGATCTGCATGGAGTCTTAGCTTGTGA 696 0.4569 MYTTSHTVMPTFAPLPEPDLSLNISPPFTSDSDAKQVGTSCNGLALTTKTLYKDMCSTSNSGSSGSDLSHEIGFCHTETSVYNLGHREPTLSLGFQTANLNPYPVQGALSRNFNHLHNYQPHTNTLDFKRNARVIHGVKKSIRAPRMRWTTTLHAHFVHVVQLLGGHERATPKSVLELMNVKDLTLSHVKSHLQMYRTVKSSDKGSAGYGQTGIGSSQKRGNCRSAWSLSL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00443 231 NCBIfam myb-like DNA-binding domain, SHAQKYF class 145 198 IPR006447 GO:0003677
Pumo10g00443 231 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 18 218 IPR044847 GO:0000976|GO:0006355|GO:0010158
Pumo10g00443 231 Pfam Myb-like DNA-binding domain 146 197 IPR001005 -
Pumo10g00443 231 Gene3D - 144 201 - -
Pumo10g00443 231 FunFam Myb family transcription factor 143 201 - -
Pumo10g00443 231 MobiDBLite consensus disorder prediction 201 231 - -
Pumo10g00443 231 SUPERFAMILY Homeodomain-like 142 199 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00443 Pumo-Chr10 5793490 5796673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00443 109 219 G2-like Transcription Factor Family AT5G42630 66.379 6.52e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo10g00443 Myb_DNA-binding 8.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00443 - - gmx:100804354 375.17