Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00440 ATGGCCTCGGGCTGCTTTCTATTCCTCTCCTTATTCCTCCTCTCAGCATCTGCCTCCCATGCACTTTCCAATGCCGAAGCCTCTTTCATTGTTCGCCGCCAATTGTTACATCTACATGAGAATGATGAATTACCCGACAACTATGTAGATAACTATAAAACAGATCTAACCTTCCCTAACCCCAGACTAAAAAGTGCATACATTGCACTCGAGGCATGGAAAAAAGCATTCTACTCAGACCCATCAAATTTCACAGCCAATTGGGTGGGCCCAGATGTTTGCTCTTACAACGGAGTTTTCTGTGAAAAGGCTCTAGATGATCCAAAGATCGACGTTGTAGCCGGGATTGACCTTAACCATGCAGACATTGCAGGTTACATTCCCCCCGAATTTGGTTTGTTAATCGACCTTGCACTTTTGCATATAAACTCAAACAGGTTTTGTGGGGTTCTCCCAAAAAGCTTTTCCAAGCTTAAGCTTCTTTTTGAGCTAGATATTAGTAACAACCGTTTTGTTGGGCGATTCCCAGAGCCTGTGCTTTCAATTCCAGACATAAAATTCCTTGACCTCAGGTTCAATGACTTTGAAGGGGAATTACCTTCTGAGCTTTTCAACAAAAGCCTCGACGCTATCTTTTTGAACAATAATCGCTTCGTGTCCACAATTCCTCAGAACCTGGGATCTTCTCCAGCTTCGGTTGTGGTTTTGGCCAATAACAATCTCACAGGCTGCCTGCCTTCGAGCATTGGCAACATGACAAAGACATTGAACGAGTTCGTTTTGATCAACAACAACCTCACCGGTTGCTTGCCCGCAGACATTGGAAAGCTCGAACAAGTTTCTGTGTTTGACATAAGCCAAAACAACTTCGTTGGCATGTTGCCAAGGACCTTCAATGGGCTTAAGAACGTGGAGCACATATCCATTGAACACAATAAGCTCACAGGTTTTGTCCCGCGTAACGTTTGCAGCTTGTCCAATTTGGTCAACTTCACCTTCTCTTACAACTATTTCAACGGTGAGGAAGAAGGTTGCGTGCCTCCTAAGAAAGATGCTGTGGTGGATGATGAGAACAACTGCATACCAGATAGGCCAAAGCAAAAGGCCGCAAATGTTTGCAATGTGGTGATAAGCAAGCCTGTGGATTGTAGCAAAGCGCAGTGTGGAGGTGGGAGCTCGTCTCATTCTTCCAATCCACCAACAACACCATCTAAGCCATCACCAAAATCTCCATCTGTGCCAAAACCTTCCAGTCCTCCTAAAGTTGAGAAACCAACACCAACACCATCACCAAAGCCACAACCTCAGCCTACCACTCCTCCAACACCAAAGCCACAACCTCAACCTACCCCTTCAACACCAAAGCCACAACCTAGCCCTTCCCCTTCTCCCTCTAACCCTCCAACACAAAAGCCACAACCCAGCCCTACCCCTTCTACCCCCAATCCTCCAACACCAAAGCCACAAGAACCCAAACCTACCCCTTCTCCCTCCAATCCTCCAACACCAAAGCCACAAGAACCCAAACCTACTCCCTCCAATCCTCCAACACCAAAGCCACAACCACCCAAAGCAACCCCTTCTCCTTCCAATCCTCCAACACCAAAGCCACAACCACCCAAAGCGACCCCATCTCCCTCTAATCCTCCAACACCACAAGCACCCAAAGTAACACCACCACCATCACCAGAGGAAGATCCTCATAGGGAAGCACCCCGACAACGACATAGACCTCCACACGCTCCGCCACCACCTGTCCAGTCTCCTCCTCCACCTGTTCACTCTCCACCACCCCCAGTAGTACATTCTCCTCCTCCACCGGTTCACTCACCCCCTCCACCTATCCAATCTCCACCCCCTCCTGTTCACTCTCCACCACCCCCAATAGTACATTCTCCACCACCACCAGTCCATTCACCACCTCCACCTGTCCACTCTCCACCACCACCACCCGTCCACTCTCCTCCTCCACCAGTTCATTCACCACCACCACCACCTGTTCATTCTCCTCCTCCACCAGTTCACTCTCCACCACCACCCGTCCACTCTCCTCCTCCACCAGTCCACTCTCCACCACCACCTGTTCACTCCCCTCCTCCACCAGTTCACTCTCCACCACCACCCGTCCATTCTCCTCCTCCACCGGTTCATTCTCCACCCCCACCGGTTCACTCTCCTCCACCACCGGTTCACTCTCCACCACCTCCCATGTACTCCCCACCACCACCAGTGCACTCTCCACCACCTCCTCCTGCACCATCTGTTTCACCTCCTCCTTCTGAAGACATCATTCTTCCCCCTAACTTCGGCTCTTCTTATGCTTCACCCCCTCCACCTATCATTGCTGGCTACTAA 2355 0.5006 MASGCFLFLSLFLLSASASHALSNAEASFIVRRQLLHLHENDELPDNYVDNYKTDLTFPNPRLKSAYIALEAWKKAFYSDPSNFTANWVGPDVCSYNGVFCEKALDDPKIDVVAGIDLNHADIAGYIPPEFGLLIDLALLHINSNRFCGVLPKSFSKLKLLFELDISNNRFVGRFPEPVLSIPDIKFLDLRFNDFEGELPSELFNKSLDAIFLNNNRFVSTIPQNLGSSPASVVVLANNNLTGCLPSSIGNMTKTLNEFVLINNNLTGCLPADIGKLEQVSVFDISQNNFVGMLPRTFNGLKNVEHISIEHNKLTGFVPRNVCSLSNLVNFTFSYNYFNGEEEGCVPPKKDAVVDDENNCIPDRPKQKAANVCNVVISKPVDCSKAQCGGGSSSHSSNPPTTPSKPSPKSPSVPKPSSPPKVEKPTPTPSPKPQPQPTTPPTPKPQPQPTPSTPKPQPSPSPSPSNPPTQKPQPSPTPSTPNPPTPKPQEPKPTPSPSNPPTPKPQEPKPTPSNPPTPKPQPPKATPSPSNPPTPKPQPPKATPSPSNPPTPQAPKVTPPPSPEEDPHREAPRQRHRPPHAPPPPVQSPPPPVHSPPPPVVHSPPPPVHSPPPPIQSPPPPVHSPPPPIVHSPPPPVHSPPPPVHSPPPPPVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPMYSPPPPVHSPPPPPAPSVSPPPSEDIILPPNFGSSYASPPPPIIAGY 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00440 784 MobiDBLite consensus disorder prediction 385 784 - -
Pumo10g00440 784 MobiDBLite consensus disorder prediction 401 561 - -
Pumo10g00440 784 MobiDBLite consensus disorder prediction 562 577 - -
Pumo10g00440 784 SUPERFAMILY L domain-like 72 359 - -
Pumo10g00440 784 PRINTS Proline rich extensin signature 417 433 - -
Pumo10g00440 784 PRINTS Proline rich extensin signature 451 472 - -
Pumo10g00440 784 PRINTS Proline rich extensin signature 398 410 - -
Pumo10g00440 784 PRINTS Proline rich extensin signature 438 450 - -
Pumo10g00440 784 Pfam Leucine rich repeat 280 336 IPR001611 GO:0005515
Pumo10g00440 784 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 252 341 - -
Pumo10g00440 784 MobiDBLite consensus disorder prediction 578 764 - -
Pumo10g00440 784 Gene3D Ribonuclease Inhibitor 66 361 IPR032675 -
Pumo10g00440 784 FunFam Leucine-rich repeat extensin-like protein 1 67 228 - -
Pumo10g00440 784 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 7 563 - -
Pumo10g00440 784 Pfam Leucine rich repeat N-terminal domain 68 101 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00440 Pumo-Chr10 5773211 5775565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00440 21 500 Trihelix Transcription Factor Family AT4G33970 57.084 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00440 - - gmx:100780677 692.189