Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00425 ATGCAACCAACATCGAACGGCTCTGATTCGCAAGCCACGGACCAGAACCAGCAACAGCAGCAGCGGACGCCGCCGCCGCCGCCGCCGCCGCAGCAGCCAGTGGCCGTGCCGCCGCAGTGGATGCCGATGCAGTACCCGGCGGCGGCCATGGTAATGCAGCACCACATGATGCCGCCTCAACATTACGCTCCGCCGCCCCAGCCCTACATGGCCTACCACCAGTACCAGCCGCACGTGCCGCACGCGCACCATCAGGGATCCAGCGCCGAGAACAAGACCATTTGGGTTGGCGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCGCATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTGAACTGGGCAGCGTTTAACACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACCTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCGAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACGTCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTCGGAGGACTTGACCCTAATGTTACAGCTGAAGATCTTAGGCAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCACTGCAGAAGCTAAATGGGACAACGATTGGCAAGCAAATGGTTCGTCTTTCATGGGGCCGCAATCCAGCAAATAAGCAGCAGTTTAGAGCAGATTTCGGCAATCCGTGGAGTGGGGCGTATTATGGGGGTCCTGTTTATGATGGTTATGGATATGCTTTGCCACCTGCTCATGACCCCAGCATATATGCTGCTGCTTATGGTGCATACCCTATTTATGGAGGACATCAACAGCAAGTAAGCTAA 1266 0.4889 MQPTSNGSDSQATDQNQQQQQRTPPPPPPPQQPVAVPPQWMPMQYPAAAMVMQHHMMPPQHYAPPPQPYMAYHQYQPHVPHAHHQGSSAENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWAAFNTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSSQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQQFRADFGNPWSGAYYGGPVYDGYGYALPPAHDPSIYAAAYGAYPIYGGHQQQVS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00425 421 CDD RRM3_NGR1_NAM8_like 289 360 - -
Pumo10g00425 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 82 366 - -
Pumo10g00425 421 MobiDBLite consensus disorder prediction 1 20 - -
Pumo10g00425 421 SUPERFAMILY RNA-binding domain, RBD 54 173 IPR035979 GO:0003676
Pumo10g00425 421 Gene3D - 184 260 IPR012677 -
Pumo10g00425 421 MobiDBLite consensus disorder prediction 265 293 - -
Pumo10g00425 421 SMART rrm1_1 186 260 IPR000504 GO:0003723
Pumo10g00425 421 SMART rrm1_1 93 168 IPR000504 GO:0003723
Pumo10g00425 421 SMART rrm1_1 291 358 IPR000504 GO:0003723
Pumo10g00425 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Pumo10g00425 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 353 IPR000504 GO:0003723
Pumo10g00425 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Pumo10g00425 421 CDD RRM2_SECp43_like 184 263 - -
Pumo10g00425 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Pumo10g00425 421 CDD RRM1_SECp43_like 93 173 - -
Pumo10g00425 421 Gene3D - 266 393 IPR012677 -
Pumo10g00425 421 SUPERFAMILY RNA-binding domain, RBD 184 361 IPR035979 GO:0003676
Pumo10g00425 421 Gene3D - 91 171 IPR012677 -
Pumo10g00425 421 FunFam Polyadenylate-binding protein RBP47 275 393 - -
Pumo10g00425 421 MobiDBLite consensus disorder prediction 1 38 - -
Pumo10g00425 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Pumo10g00425 421 FunFam Polyadenylate-binding protein RBP47C isoform A 184 260 - -
Pumo10g00425 421 MobiDBLite consensus disorder prediction 261 293 - -
Pumo10g00425 421 FunFam Polyadenylate-binding protein RBP47C isoform A 91 171 - -
Pumo10g00425 421 MobiDBLite consensus disorder prediction 21 38 - -
Pumo10g00425 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 362 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00425 Pumo-Chr10 5587143 5592543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00425 93 389 Eukaryotic Initiation Factors Gene Family AT2G23350 27.742 1.07e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00425 - - gmx:100785454 699.508