Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00415 ATGGTGGCAGCAGTTGCATACGAGGAGAGTCGTCGGAAGAGATTGGAGGAGAACAGAAAGAGGATGGAAGCCCTCAATCTCCCCCTCCTCTCTCAAGCTCTTCACAAATCCCCTTCTCCCAAACCCTCGCCGCTCAAGCAGGTCAAGAATCGCAGCATTCAGAAAGAGGTGGTTGTGGTCAGAAGGTCAAGCCGTGTTGCAAACTTGCCCTCTCCTGTTTACAAAGAAGTGGTTGTTGATCGCGTGACAATACCTAGAAGAGCTCATGGTAGAGCCTACAATAGGCACAGGGATTATGCGAATAGGGTATATGCTTCAGATGAAGCCAGAGAGGAAGCATTGGAGAAAGCAGAAACCTTAATGTCGGGTCTACAATCTGAATATCCAGCCTTCATAAAGTCAATGCTCCAGTCCCACGTCAGCGGGGGATTCTGGCTGGGCCTTCCAGTCCATTTCTGCAAGAGCAATCTTCCAAAAGAGGATGAAGTGATGACTTTGATTGATGAAGATGGGAATGAGTATCCAACAATATATTTGGCACGAAAAACAGGACTTAGTGGTGGATGGAAAGGTTTTGCGGTTGCTCATGAACTAGCTGACGGGGACGCTGTAATTTTTCAATTAATTAAGCGCACTGCATTCAAGGTGTACATTATTAGAGCGAATAGTCCTCCAGAGGATAAGCAGCTTAAGTGA 696 0.4684 MVAAVAYEESRRKRLEENRKRMEALNLPLLSQALHKSPSPKPSPLKQVKNRSIQKEVVVVRRSSRVANLPSPVYKEVVVDRVTIPRRAHGRAYNRHRDYANRVYASDEAREEALEKAETLMSGLQSEYPAFIKSMLQSHVSGGFWLGLPVHFCKSNLPKEDEVMTLIDEDGNEYPTIYLARKTGLSGGWKGFAVAHELADGDAVIFQLIKRTAFKVYIIRANSPPEDKQLK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00415 231 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 42 224 IPR044837 -
Pumo10g00415 231 SMART B3_2 131 222 IPR003340 GO:0003677
Pumo10g00415 231 Pfam B3 DNA binding domain 131 221 IPR003340 GO:0003677
Pumo10g00415 231 SUPERFAMILY DNA-binding pseudobarrel domain 124 222 IPR015300 -
Pumo10g00415 231 Coils Coil 5 25 - -
Pumo10g00415 231 CDD B3_DNA 129 220 IPR003340 GO:0003677
Pumo10g00415 231 Gene3D - 105 223 IPR015300 -
Pumo10g00415 231 ProSiteProfiles B3 DNA-binding domain profile. 131 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00415 Pumo-Chr10 5435589 5440231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00415 3 222 B3 DNA Binding Superfamily AT3G19184 54.018 2.02e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo10g00415 B3 7.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00415 - - gmx:100797091 410.609