Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00414 ATGGTGTCAGCAATTGCATACGAGGAGAGTCGTCGCAAGAGATTGGAGGAGAACAGAAAGAGGATGGAAGCCCTCAATCTTCCCCTCCTTTCTCAGGCTCTTCAAAAATCCCCTTCTCCCAAACCCTCACCGCTGAAGCAGGTCAAAAATCGCAGCATTCAGAAAGAGGTGGTTGTGGTCAGAAGGTCAAGCCGTGTGGCCAAATTGCCCTCTCCTGTTTACAAAGAAATAGTTATTGATCGCGTGACATTACCTAAAAGAAGTTATGATAAGTACAGGGATTATGCGAATCGGGTATATACTTCAGATGAGGCCAGAGAGGAAGCATGGGAGAAAGCAGAAAAGTTAATGTCGGCTTTAGAATCTGAATATCCATCCTTCATAAAGTCAATGCTCCAGTCCCACGTCAGCGGGGGATTCTGGCTGGGCCTTCCAGTCCACTTCTGCAAGACCAATCTTCCGAAAAAGGACGAAGCGATCACTTTGATTGATGAGGATGGGACTGAGTATCCGACAATTTATTTGTCAGGAAAAACAGGACTTAGTGGTGGATGGAGAGGTTTTGCGATTGCTCATGACCTAGCTGACGGGGACGCTTTAGTTTTTCAATTAATTAAGCGCACCGCATTCAAGGTGTACATTGTTAGAGCAAATTGTCCTCCGGAGGATAAACAGCTTGAGTGA 684 0.4591 MVSAIAYEESRRKRLEENRKRMEALNLPLLSQALQKSPSPKPSPLKQVKNRSIQKEVVVVRRSSRVAKLPSPVYKEIVIDRVTLPKRSYDKYRDYANRVYTSDEAREEAWEKAEKLMSALESEYPSFIKSMLQSHVSGGFWLGLPVHFCKTNLPKKDEAITLIDEDGTEYPTIYLSGKTGLSGGWRGFAIAHDLADGDALVFQLIKRTAFKVYIVRANCPPEDKQLE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00414 227 MobiDBLite consensus disorder prediction 30 48 - -
Pumo10g00414 227 Pfam B3 DNA binding domain 127 217 IPR003340 GO:0003677
Pumo10g00414 227 Coils Coil 5 25 - -
Pumo10g00414 227 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 44 221 IPR044837 -
Pumo10g00414 227 SMART B3_2 127 218 IPR003340 GO:0003677
Pumo10g00414 227 CDD B3_DNA 125 216 IPR003340 GO:0003677
Pumo10g00414 227 SUPERFAMILY DNA-binding pseudobarrel domain 120 218 IPR015300 -
Pumo10g00414 227 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677
Pumo10g00414 227 Gene3D - 101 218 IPR015300 -
Pumo10g00414 227 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00414 Pumo-Chr10 5431192 5433966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00414 3 218 B3 DNA Binding Superfamily AT3G19184 55.000 2.85e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo10g00414 B3 2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00414 - - gmx:100794327 382.104