Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00396 ATGAATTTCAAGAGCTTCGGAAATGATGTTGCCGGCGGCGGTGACGGCGGCGGAGGGAGGCCGGCGGGGAACTTCTCCCTGGCGCGGCAGCCGTCGGTGTACTCGCTGACGTTTGACGAGTTCATGAACAGCATGGGAGGTTCCGGGAAGGACTTTGGCTCCATGAACATGGACGAGTTGCTGAAGAATATTTGGACCGCGGAGGAGGTTCAGACAATGGCGTCGGCGGGCGTCGCCGCCGATGACGGCGGCGCCGGCGTCAGCCATTTGCAGCGGCAGGGGTCGCTGACGCTGCCGCGGACCCTTAGCCAGAAGACCGTGGATGAGGTTTGGAAGGACATTGCGAAGGACTACGGTGGGCCCAACTTGGCCCAGACTCCAAGACAGCCCACGCTGGGAGAGATGACGTTGGAGGAGTTCTTGGTCAGAGCTGGTGTGGTTAGAGAAGATGCGAAGCCAAACGACGGCGTTTTTGTAGATCTGTCTCGGGCTGGGAATAATACTGGTTTGGGTCTGGGGTTTCAGCAGATGAACAAGGTTGGTGCTGCTACCGGTTTGATGGGTAACCGGTTGAACAATGATCCACTGGTGGGTCTTCAGTCTTCTGCTAACCTGCCTTTGAATGTTAATGGAGTGAGATCATCGAATCAGCAGCCACAGATGCAGAGTCCGCAACAACAGCAGCAGCAGCAGATATTTCCTAAGCAGAGTGCTATGTCTTATGCAGCTGCTCAGATGCCTCAGGGAATGGTGAGGGGTGGGATTGTGGGGCTTGGTGGTGATCAAGGTGGAGGGATTGGTATGGTTGGTTTGGCTCCTGGGTCTGTTCATGTTGCAACTGGCTCTCCTGCTGCTAACCAGCTGTCTGGTGATAAGATGGGGAAGAGCAATGGGGATACCTCGTCCGTGTCGCCAGTTCCTTATGTCTTTAACAGCGGTCTGCGAGGGAGGAAGAGCGGGGGACAAGTGGAGAAGGTGATTGAGAGGAGGCAGAGAAGAATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGGCTTATACCATGGAATTGGAAGCAGAAGTTGCAAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGGCAGAAATCATGGAAATTCAGAAAAATCAAGTAAGTTGGGCTTTTGGTTTTGTTCTTCTTATTCAGCATTCTTTTTGCTCCTTTTTATTTTTCATCGGTCATTGCAAAGTATTTGCATTCAGCTTAATTATATACAAGTCACTACTTTTCCTAGGTTCAATACGCCCCATTTCATGA 1296 0.5177 MNFKSFGNDVAGGGDGGGGRPAGNFSLARQPSVYSLTFDEFMNSMGGSGKDFGSMNMDELLKNIWTAEEVQTMASAGVAADDGGAGVSHLQRQGSLTLPRTLSQKTVDEVWKDIAKDYGGPNLAQTPRQPTLGEMTLEEFLVRAGVVREDAKPNDGVFVDLSRAGNNTGLGLGFQQMNKVGAATGLMGNRLNNDPLVGLQSSANLPLNVNGVRSSNQQPQMQSPQQQQQQQIFPKQSAMSYAAAQMPQGMVRGGIVGLGGDQGGGIGMVGLAPGSVHVATGSPAANQLSGDKMGKSNGDTSSVSPVPYVFNSGLRGRKSGGQVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELQKKQAEIMEIQKNQVSWAFGFVLLIQHSFCSFLFFIGHCKVFAFSLIIYKSLLFLGSIRPIS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00396 431 SUPERFAMILY Leucine zipper domain 329 377 IPR046347 GO:0003700|GO:0006355
Pumo10g00396 431 Gene3D - 327 383 - -
Pumo10g00396 431 MobiDBLite consensus disorder prediction 209 231 - -
Pumo10g00396 431 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 327 384 - -
Pumo10g00396 431 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 332 347 IPR004827 GO:0003700|GO:0006355
Pumo10g00396 431 Coils Coil 345 382 - -
Pumo10g00396 431 CDD bZIP_plant_BZIP46 329 383 - -
Pumo10g00396 431 Pfam bZIP transcription factor 329 378 IPR004827 GO:0003700|GO:0006355
Pumo10g00396 431 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 27 375 IPR043452 GO:0003700|GO:0045893
Pumo10g00396 431 SMART brlzneu 325 384 IPR004827 GO:0003700|GO:0006355
Pumo10g00396 431 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 327 378 IPR004827 GO:0003700|GO:0006355
Pumo10g00396 431 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00396 Pumo-Chr10 5269053 5274081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00396 27 350 bZIP Transcription Factor Family AT1G45249 53.955 4.63e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo10g00396 bZIP_1 1.1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00396 K14432 - gmx:100819313 597.816