Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00392 ATGGAGCAGTTAAAGCCGGAGGAGGAGCAGATGGAGGACATGATGACGATGATGATGCAGCAGCTCCCTGAATTCTCTGAACCTTACGGTGACATTAACCCTCACACCATGGAAACAGGATTTCATCCCCCAGAGGACTTCTATGGTTACCGCAACAGTACTATGCCACTAGCAGATTTAATTGATAATAATAATAACCCTCCTAGTTCCAATATGCCTTGGTCCTCATCATTCACACACTTACCATCCACCACTACAATATCTTTCTCCAATAATAACCCAATGATGCTTCAAGAACAACAACAAGCCCCAACCTACGAGGGTGCAAATGCAAACCCTTACGGTGACAACAAGCGGCATTCGATGGCTGCAATGAGGGAGATGATATTCAGAATCGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTGAAGCCGCCGAAGCGAAGGAACGTGAAGATTTCCAAGGATCCTCAGAGCGTGGCGGCGCGCCACCGCAGAGAGAGGATCAGCGAGAGGATAAGGATACTGCAGAGACTGGTCCCCGGAGGAACTAAGATGGACACTGCCTCCATGTTGGATGAGGCCATTCACTACGTCAAGTTCCTCAAAACGCAGGTTCAGTCACTCGAACGCGCTTCCGCACCAGGGATAGGGATAGGGTTCCCTGTTCCTATGTCTAGTACTTCCAATTCCACCCCTTATTTTCCTCTGCCAAAACCTTACCAACAAGCTCCGAACATGGAGATTCATGATAGATCATATGATTAA 774 0.4871 MEQLKPEEEQMEDMMTMMMQQLPEFSEPYGDINPHTMETGFHPPEDFYGYRNSTMPLADLIDNNNNPPSSNMPWSSSFTHLPSTTTISFSNNNPMMLQEQQQAPTYEGANANPYGDNKRHSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASAPGIGIGFPVPMSSTSNSTPYFPLPKPYQQAPNMEIHDRSYD 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00392 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Pumo10g00392 257 FunFam BHLH transcription factor 158 218 - -
Pumo10g00392 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 213 IPR036638 GO:0046983
Pumo10g00392 257 Gene3D - 154 217 IPR036638 GO:0046983
Pumo10g00392 257 Pfam Helix-loop-helix DNA-binding domain 165 204 IPR011598 GO:0046983
Pumo10g00392 257 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 63 246 IPR045843 GO:0003700|GO:0006355
Pumo10g00392 257 SMART finulus 161 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00392 Pumo-Chr10 5231548 5232321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00392 122 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 95.604 2.16e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g00392 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00392 - - gmx:100815041 340.887