Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00389 ATGCAAGGGCAGAGAGGTACAGTTGGTTCAATGCCTGAAACCTTAGAATTTGATTGTGGATCTACATCAGCTAATTCTACTGTGGATCAGCAGATTTGCTGGAATAGTGTGAATCCTGCAGAAAATCAAATACCTGATTATATACTTTCTCCTGGTGATATGAACTCATCTTATGGGAATTTTATTATTAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCCAGTAATACACCAAATGAGATTAACAATAATGAGCAAAAACGAGAACTTGGCTGGCCATCAACCATTACTGCTGGTGCATTGGCTGGTCCAAGACTAGAAGAAAGGCGCCTTGAACCAACCAATGCTCTTTCACTAGACAATGTCAATACAGGTCCTATGTACACGCGTAGCCCCAATTCTTGTTTGATGTCCCAGAATTTCAACTTAAATGCAGGTTTAGCGGACAGTGGCAGTGATAATAGTCAACATCTGGAGCTCCCTAACTTAAACAAGTCTAGTGGGTCAGCAAATGAGTGTATACCACCTAATGTTGGATCTGGTTCTTTTCTGCTTCCTTCTGGAAATAATGGCTTCCTGGTAGAAGATACTGATGGTAGGCCAGGTTGTTCTCTTGATACTCGACGTGTCTCTTGTAAAAGAAAGGCCGTTGAAGGAAATAATGGACAATCTTCAGATGTTGGGAGTTCTAGCTACAGTCAGCACACAGATGGTAGTTCTTGGCACACCATTCCTACTCAGGATAATGCTGGAAGCAGTTCAAGCAGACCTATTTCCTCAGAACAGGTAAACGCAAGACTTGGCCTGGGTATGGGGGATGAAGCATCTGAAAATGTTCCTGATTCAAACATTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGTTTGAGGTTAAATCCTTCAAACCCACAGAATTCTGCTCCTCCCACTGCATTCTCAACTGGGAGCATGATTAGGCATTCTGGTGTTTCTTCGTCCTCTCAAGTATCACAAAGGTTTCATTCTGTTGATAATTCTCTGAACTTGAGGTCCTCACCACCGATAGATAATGTGGTTCCTCAAAGCCAGCCACTTGTAATCCATGTTCCTGCTTTGCCTAGGAATAGACAATCATTTAGATGGAGTGGTGGTTCTAGCTCCAGAAACATCCATTCATCAAATTCAATTATATGTGCAGACAGGGATCAGGAGGATGCAAGCTCAGGAAGAATGTCCAGAAATATTTTAGAACATCCAGTCTTTGTACCTGCAAATGGTTTAAGAAATTTAGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGAAAATTTAAGTATTCCAGGAAATGTCGCTTCTTCATCACGGACTGGATCAAATCCAGCTGCCAATCCCTCATCTGCCCCAACTTGGGTTTCTCGTCCTAATCATCCACAGCATCCATGGAGGTTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCTGGTTCTGATGCTATTGGAAGTCCAAGCAATAATTATTCTTCCTTGCGCTCTGGTCTTTCTGCATCTGAACCAAGGGCGTTATCATCAGGGAGTGGGGCAAACCCGAGATCATCTTCATGGTTGGAGAGGCAAGGAGATAGTGAATTTGGAATTCCTTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTTTTGGGCCTTATGCGTAGAGGTGGGAACGTGCGATTTGAGGATGTTGTGATCCTTGATCATCAATCGTTTCTTTCTGGAATAGCTGATGTTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCGTATTGAAACTCTTGAAACAGAGAAAGCACTCGGTTGAAAAAGGGTCTCAGATTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGGGATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAGCAGCTGTATCAAACAGTGGCTAATGCATAAGAATCTCTGTCCCATTTGTAAGACAGCGGGCTTGGCAACATGA 2127 0.4292 MQGQRGTVGSMPETLEFDCGSTSANSTVDQQICWNSVNPAENQIPDYILSPGDMNSSYGNFIINHEWQNLSGWSLGEPSSSNTPNEINNNEQKRELGWPSTITAGALAGPRLEERRLEPTNALSLDNVNTGPMYTRSPNSCLMSQNFNLNAGLADSGSDNSQHLELPNLNKSSGSANECIPPNVGSGSFLLPSGNNGFLVEDTDGRPGCSLDTRRVSCKRKAVEGNNGQSSDVGSSSYSQHTDGSSWHTIPTQDNAGSSSSRPISSEQVNARLGLGMGDEASENVPDSNIAGSSESFHRNFRLRLNPSNPQNSAPPTAFSTGSMIRHSGVSSSSQVSQRFHSVDNSLNLRSSPPIDNVVPQSQPLVIHVPALPRNRQSFRWSGGSSSRNIHSSNSIICADRDQEDASSGRMSRNILEHPVFVPANGLRNLVQNPTVRASSSSSENLSIPGNVASSSRTGSNPAANPSSAPTWVSRPNHPQHPWRLSEYVRRSLFSPGSDAIGSPSNNYSSLRSGLSASEPRALSSGSGANPRSSSWLERQGDSEFGIPYSLRTLAVASEGSSRLVSELRNVLGLMRRGGNVRFEDVVILDHQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKLLKQRKHSVEKGSQIDAEPCCVCQEDYGDGDDIGTLDCGHDFHSSCIKQWLMHKNLCPICKTAGLAT 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00389 708 MobiDBLite consensus disorder prediction 499 537 - -
Pumo10g00389 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 705 IPR013083 -
Pumo10g00389 708 MobiDBLite consensus disorder prediction 303 339 - -
Pumo10g00389 708 SUPERFAMILY RING/U-box 648 703 - -
Pumo10g00389 708 FunFam E3 ubiquitin-protein ligase MBR2 629 706 - -
Pumo10g00389 708 ProSiteProfiles Zinc finger RING-type profile. 661 702 IPR001841 -
Pumo10g00389 708 Pfam Ring finger domain 661 702 IPR001841 -
Pumo10g00389 708 MobiDBLite consensus disorder prediction 75 99 - -
Pumo10g00389 708 MobiDBLite consensus disorder prediction 435 475 - -
Pumo10g00389 708 MobiDBLite consensus disorder prediction 435 478 - -
Pumo10g00389 708 SMART ring_2 661 701 IPR001841 -
Pumo10g00389 708 MobiDBLite consensus disorder prediction 75 97 - -
Pumo10g00389 708 MobiDBLite consensus disorder prediction 153 180 - -
Pumo10g00389 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 156 706 IPR045191 GO:0061630
Pumo10g00389 708 MobiDBLite consensus disorder prediction 223 264 - -
Pumo10g00389 708 MobiDBLite consensus disorder prediction 220 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00389 Pumo-Chr10 5153126 5163737 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00389 1 708 C3H Transcription Factor Family AT2G15530 32.342 1.42e-73 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00389 - - gmx:100783014 1281.93