Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00386 ATGGTCAGTTTTGATGAGCCTGTGGAGGTTGAAGGCTTAAGGGCTTGGAAGGATGTTGTGATCCTTGATCATCAATCGTTTCTTTCTGGAATAGCTGATGTTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCGTATTGAAACTCTTGAAACAGAGAAAGCACTCGGTTGAAAAAGGGTCTCAGATTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGGGATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAACAGCTGTATCAAACAGTGGCTAATGCATAAGAATCTCTGTCCCATTTGTAAGACAGCGGGCTTGGCAACATGA 426 0.4366 MVSFDEPVEVEGLRAWKDVVILDHQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKLLKQRKHSVEKGSQIDAEPCCVCQEDYGDGDDIGTLDCGHDFHNSCIKQWLMHKNLCPICKTAGLAT 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00386 141 SMART ring_2 94 134 IPR001841 -
Pumo10g00386 141 SUPERFAMILY RING/U-box 81 136 - -
Pumo10g00386 141 ProSiteProfiles Zinc finger RING-type profile. 94 135 IPR001841 -
Pumo10g00386 141 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 18 139 IPR045191 GO:0061630
Pumo10g00386 141 Pfam Ring finger domain 94 135 IPR001841 -
Pumo10g00386 141 FunFam E3 ubiquitin-protein ligase MBR2 62 139 - -
Pumo10g00386 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 138 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00386 Pumo-Chr10 5077826 5079456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00386 11 141 C3H Transcription Factor Family AT2G15530 60.741 1.17e-54 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00386 - - gmx:100784575 255.373