Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00383 ATGAGTATCCCTGCTGTTCGACGCATTTCAGAATGCTTCGTCAAGCCACATCGTCCAATTGAAGAGTCTAATCAAATATGTTATTTAACACCTTGGGATATTCTCCTATTGTCTCATCACTATATCCAGAAGGGTTTACTCTTCAAGAAGCCTCCAACACTTGTTGATCACCATGATTTCATAGAGAATCTGTTGGAGAAGCTCAAACACTCTCTTTCTCTCACCCTTTCCCATTTCTATCCATTGGCTGGTCGCCTTGTCACCCACAAAACCCAACACCCTCCCTCATATGCCTTTTTCGTTGATTGCAACAACAGTGATGGAGCTAGATTCATCTATGCAACTTTAGACATGACCATATCTGACATACTCACCCCCATTGACGTCCCACCCATTGTTCATTCATTCTTTGACCACCACAAAGCAGTCAATCATGATGGTCACACCATGCCATTGTTGTCCATCCAAGTCACTGAACTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCACACTCTTGGTGATGGCACTTCTTATTGGAATTTCTTCAATACATGGTCTCAAATCTTTCAAGCTCAAGCTCAAGCTCAAGGCCATGAATACGATGTTCCCATTTCACACCAACCCATTCTCAACCGCTGGTTTCCGAATGATTGCAGTCCTTCAATCAATCTTCCTTTCAAACATCATGACGAGTTTATTTGCAACTTTGAAGCACCCAAGCTGAGAGAGAGAATCTTCCACTTTTCAGCAGAGTCTATAGCAAAACTGAAAGCAAAAGCCAACTCAGAGTGCAATACCACCAAAATCTCTTCACTCCAGTCATTGTCTGCACTTGTTTGGAGATCCATAACTCGTGCGCGCTCCGTGCCGTACGACCAAAAAACAAGTTGCAAGATGGCCATAAACAATCGACCAAGGATGGAACCGCGTATGCCTGAGGAATACTTTGGAAACTTAGTTCAAGTAGTGAGTGCAGAAACGACAACAGGGGAATTGCTTGAGAATAATCTAGGATGGGCAGCATGGTTGTTGCATCTGGCTGTTACAAACCATAACGACAAAGTGGTGCAGCAATCGTTCCAAGGATGGTTACAGTCTCCTTTTATCCCTCAACTTGGTCGGTTGTTTGATCCGTACAGTGTGTTGATGGGTAGCTCGCCCAGGTTCAACAAGTATGGGAGTGAATTTGGAATGGGGAAAGCGCTGGCGATTAGAAGTGGCTATGCTAACAAGTTTGATGGGAAAGTGACGTCATACCCAGGTCGTGAAGGAGGGGGAAGCATCGATTTGGAAGTGTGCCTTTTGCCACATAATATGAGCGCGCTGGAATCAGATGAGGAGTTCATGAATGCCGTTTCGGTGTCCAATCCCCTGTTCTAG 1386 0.4459 MSIPAVRRISECFVKPHRPIEESNQICYLTPWDILLLSHHYIQKGLLFKKPPTLVDHHDFIENLLEKLKHSLSLTLSHFYPLAGRLVTHKTQHPPSYAFFVDCNNSDGARFIYATLDMTISDILTPIDVPPIVHSFFDHHKAVNHDGHTMPLLSIQVTELVDGVFIGCSMNHTLGDGTSYWNFFNTWSQIFQAQAQAQGHEYDVPISHQPILNRWFPNDCSPSINLPFKHHDEFICNFEAPKLRERIFHFSAESIAKLKAKANSECNTTKISSLQSLSALVWRSITRARSVPYDQKTSCKMAINNRPRMEPRMPEEYFGNLVQVVSAETTTGELLENNLGWAAWLLHLAVTNHNDKVVQQSFQGWLQSPFIPQLGRLFDPYSVLMGSSPRFNKYGSEFGMGKALAIRSGYANKFDGKVTSYPGREGGGSIDLEVCLLPHNMSALESDEEFMNAVSVSNPLF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00383 461 Pfam Transferase family 8 451 - -
Pumo10g00383 461 Gene3D - 8 227 IPR023213 -
Pumo10g00383 461 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 452 - -
Pumo10g00383 461 Gene3D - 236 446 IPR023213 -
Pumo10g00383 461 FunFam Tryptamine hydroxycinnamoyl transferase 229 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00383 Pumo-Chr10 5029686 5031507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00383 66 445 Monolignol Biosynthesis Gene Families AT5G48930 26.650 3.14e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00383 - - gmx:100792511 853.203