Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00379 ATGCGAGATCCAAATGGAATTAGTAGAGGATCTGGATTTGTTGCATTTTCAACTGCTGAGGGAGCAACTCGGGCTCTTGGTGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAAGAAGAGAGAAGAGCGAGGTTACAGGCACAATTTTCACAAGCGAGGCCTGTTGCAATAACCCCTACTGTTTCACCTCGAATGCCACTATACCCTCTAGGGGCTCCTGGGATGGGACAACAATTTTTGTATGGGCAAGCACCTCCAACCATCATACCTCAAGCTGCATTTGGTTACCAGCAGCATTTTGTTCCTGGAATGAGGCCAGGTGGTGCTCCAAACTTCTATGTTCCACTGGTTCAGCAGGGTCAACAGGGGCAGCGCCCAGGAGGACACCGAGGAGCAGGTCCTATGCAACATCTCCAGCAGCCACTGCCATTGATGCACCAACAGATGCTTCCAAGGGGACATGTCTATCGATATCCTCCTGGCTCCAATCTGCAAAATATTCAAATGGCAGGAGTAGCTGGAGGAATGGTCACTTATGGCATTGGTCAGCCAATGCCCATTCAGGCCCTGGCCACGGCCCTTGCCAATGCTACTCCTGAACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCGTTAGTAGATAAGCTGGAGCATGAAGCAGCAGCAAAGGTTACTGGTATGCTTTTAGAGATGGACCAGCCTGAGGTATTACATCTGATTGAGTCACCAGATGCTCTCAAGGCAAAAGTTGTTGAGGCCATGGATGTGTTGAGAAAAGTTACACAGCAGCAATCAAACAGCCCAGCCGATCAACTGGCTTCACTCTCTCTGAATGATAATCTCGAGTCTTAG 882 0.4898 MRDPNGISRGSGFVAFSTAEGATRALGEMNGKMVAGKPLYVALAQRKEERRARLQAQFSQARPVAITPTVSPRMPLYPLGAPGMGQQFLYGQAPPTIIPQAAFGYQQHFVPGMRPGGAPNFYVPLVQQGQQGQRPGGHRGAGPMQHLQQPLPLMHQQMLPRGHVYRYPPGSNLQNIQMAGVAGGMVTYGIGQPMPIQALATALANATPEQQRTMLGEALYPLVDKLEHEAAAKVTGMLLEMDQPEVLHLIESPDALKAKVVEAMDVLRKVTQQQSNSPADQLASLSLNDNLES 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00379 293 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 195 272 IPR002004 GO:0003723
Pumo10g00379 293 SMART poly_2 207 270 IPR002004 GO:0003723
Pumo10g00379 293 FunFam Polyadenylate-binding protein 191 273 - -
Pumo10g00379 293 PANTHER BOULE-RELATED 1 196 - -
Pumo10g00379 293 SUPERFAMILY PABC (PABP) domain 148 284 IPR036053 GO:0003723
Pumo10g00379 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 46 IPR000504 GO:0003723
Pumo10g00379 293 MobiDBLite consensus disorder prediction 271 293 - -
Pumo10g00379 293 Gene3D - 191 274 - -
Pumo10g00379 293 Pfam Poly-adenylate binding protein, unique domain 203 267 IPR002004 GO:0003723
Pumo10g00379 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 39 IPR000504 GO:0003723
Pumo10g00379 293 Gene3D - 1 64 IPR012677 -
Pumo10g00379 293 SUPERFAMILY RNA-binding domain, RBD 1 61 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00379 Pumo-Chr10 5002357 5004905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00379 1 60 Eukaryotic Initiation Factors Gene Family AT2G23350 45.000 1.34e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00379 K13126 - gmx:100799386 524.242