Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00378 ATGGCGCAAATTCCTGAGAACCCCAGCAATGACGCGGCGGCGGCGGCTTCCGGTGCGAACCCGTCGCTGACCACCATCTCGTTGTACGTCGGGGATCTTGACCACGACGTCAACGATCCACAGCTCTATGATCTCTTCAACCAGGTTGGCCAAGTCGTCTCCGTTCGAATTTGCAGGGACCTCGCCACCCAACAATCCCTTGGTTACGGCTACGTCAATTTCAGTAACGCTCACGATGCCGCAAAAGCAATTGAAGTGCTAAATTTCACTCCGCTGAATGGCAAACCCATTAGGATAATGTACTCTCTTCGGGACCCTAGTGCTCGGAAGAGTGGCGCAGCTAATGTTTTTATAAAGAATTTGGATAAGGCAATCGATCACAAGGCTTTACACGATACTTTTTCAGCTTTTGGGAACATTCTATCTTGCAAGATTGCGACAGATGCTTCTGGCCAGTCTAAAGGCCATGGTTTTGTGCAGTTTGAGAGTGAAGAATCTGCACAAAACGCAATTGACAAGTTAAACGGCATGCTGATCAATGATAAGCAGGTCTATGTGGGTCCTTTCCTGCGAAAGCAGGATAGAGAGAGTGCTCTTAGTGGCGCAAAGTTTAATAACGTTTATGTGAAAAACCTGTCGGAGTCAACAACTGATGCTGACATGAAGAGAATTTTTGGAGAATATGGAGCTATTACTAGTGCTGTAGTGATGAGAGATGTAGATGGTAAATCAAAATGTTTTGGTTTTGTCAATTTTGCAAATGCAGACGATGCTGCTAAAGCTGTGGAGGTTCTTAATGGAAAGAATTTTGATGGTAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAGTCTGAAAGGGAGCTTGAACTGAAAGGGCGACATTGA 885 0.4554 MAQIPENPSNDAAAAASGANPSLTTISLYVGDLDHDVNDPQLYDLFNQVGQVVSVRICRDLATQQSLGYGYVNFSNAHDAAKAIEVLNFTPLNGKPIRIMYSLRDPSARKSGAANVFIKNLDKAIDHKALHDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGPFLRKQDRESALSGAKFNNVYVKNLSESTTDADMKRIFGEYGAITSAVVMRDVDGKSKCFGFVNFANADDAAKAVEVLNGKNFDGKEWYVGKAQKKSERELELKGRH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00378 294 SMART rrm2_1 206 278 IPR003954 GO:0003676
Pumo10g00378 294 SMART rrm2_1 27 100 IPR003954 GO:0003676
Pumo10g00378 294 SMART rrm2_1 115 187 IPR003954 GO:0003676
Pumo10g00378 294 Gene3D - 200 293 IPR012677 -
Pumo10g00378 294 CDD RRM2_I_PABPs 112 188 IPR045305 -
Pumo10g00378 294 CDD RRM1_I_PABPs 27 106 IPR034364 -
Pumo10g00378 294 SMART rrm1_1 27 100 IPR000504 GO:0003723
Pumo10g00378 294 SMART rrm1_1 115 187 IPR000504 GO:0003723
Pumo10g00378 294 SMART rrm1_1 206 278 IPR000504 GO:0003723
Pumo10g00378 294 FunFam Polyadenylate-binding protein 16 113 - -
Pumo10g00378 294 FunFam Polyadenylate-binding protein 115 188 - -
Pumo10g00378 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Pumo10g00378 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Pumo10g00378 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 275 IPR000504 GO:0003723
Pumo10g00378 294 FunFam Polyadenylate-binding protein 195 290 - -
Pumo10g00378 294 PANTHER RNA BINDING PROTEIN 20 88 - -
Pumo10g00378 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 186 IPR000504 GO:0003723
Pumo10g00378 294 CDD RRM3_I_PABPs 204 283 - -
Pumo10g00378 294 Gene3D - 114 187 IPR012677 -
Pumo10g00378 294 SUPERFAMILY RNA-binding domain, RBD 203 288 IPR035979 GO:0003676
Pumo10g00378 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Pumo10g00378 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 282 IPR000504 GO:0003723
Pumo10g00378 294 SUPERFAMILY RNA-binding domain, RBD 27 194 IPR035979 GO:0003676
Pumo10g00378 294 Gene3D - 6 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00378 Pumo-Chr10 5000694 5002083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00378 12 294 Eukaryotic Initiation Factors Gene Family AT4G34110 70.070 3.28e-147 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00378 K13126 - gmx:100799386 530.791