Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00376 ATGATTGTCCCAGATATGGAAGAAGAAGGATTAGGAGATTGTTGTTCCTTGAATTCGACGATGACGAGGAATAGCGAGAAGCGAAAGCAGCAGCAGCACCACCAACAGCAAGAGAAGCCATACAGAGGAATAAGGATGAGGAACTGGGGTAAGTGGGTGGCGGAGATTAGAGAACCCAACAAGAGGTCGAGGATCTGGTTGGGTTCTTACGCCACCCCTGTCGCCGCCGCACGCGCCTATGACACCGCCGTCTTCTACCTCCGAGGCCCTTCCGCTCGCCTCAACTTCCCCGAATTGCTCGACGTTTCCACCGGCCAACAACACGGCAACATGTCCGCCGATTCAATTCGCAAAAAAGCCACCCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCAGCAACCCTCGTCCTCACACTCCGCTAATTCCAGCCACGTCACCTTTGATGACAAACCAGACTTGAACGAGTTTCCAAAACCTGAAGATTAG 495 0.5394 MIVPDMEEEGLGDCCSLNSTMTRNSEKRKQQQHHQQQEKPYRGIRMRNWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFYLRGPSARLNFPELLDVSTGQQHGNMSADSIRKKATQVGARVDALQTALQQPSSSHSANSSHVTFDDKPDLNEFPKPED 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00376 164 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Pumo10g00376 164 PIRSF PTI6 13 163 IPR017392 GO:0003700
Pumo10g00376 164 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Pumo10g00376 164 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Pumo10g00376 164 MobiDBLite consensus disorder prediction 1 41 - -
Pumo10g00376 164 MobiDBLite consensus disorder prediction 127 164 - -
Pumo10g00376 164 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Pumo10g00376 164 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Pumo10g00376 164 MobiDBLite consensus disorder prediction 26 41 - -
Pumo10g00376 164 MobiDBLite consensus disorder prediction 128 150 - -
Pumo10g00376 164 Pfam AP2 domain 41 89 IPR001471 GO:0003700|GO:0006355
Pumo10g00376 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 21 164 - -
Pumo10g00376 164 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Pumo10g00376 164 PRINTS Ethylene responsive element binding protein signature 79 99 IPR001471 GO:0003700|GO:0006355
Pumo10g00376 164 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00376 Pumo-Chr10 4962226 4963515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00376 34 164 AP2-EREBP Transcription Factor Family AT3G50260 57.778 9.25e-51 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo10g00376 AP2 2.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00376 K09286 - gmx:100801528 261.922