Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00365 ATGGCTTACCACCATCATGACACCCTATACTGCTCCGAAGAGCATTGGGTAGGGGAAGATGAATTTGAGCAAGCAGAGGACGAGTACAGCGATTACCACCTAAGCACTAATAGTAGCACCATAATAAACTACTCCCCTGAGTCCCCTCATTTGTTGCTCGAAAGCGACATGTTTTGGGACGAGCAAGAGTTGACATCGCTGCTGGGGAAAGAACAACACAACCCACTAAGCACCTGCCTCCAAACCAACCCTAACCCTGCCTTGGAGGGTGCTCGCAGAGAAGCCGTGGAGTGGATGCTCAAAGTGAACGCCCACTTCTCCTTCTCTGCTCTCACCGCTGTTCTTGCGGTCAACTACTTTGACCGTTTTCTCTTCAGCTTCCGCTTTCAGAATGACAAGCCATGGATGACTCACCTCGCTGCTGTCTCTTGCCTCTCCCTCGCTGCCAAGGTGGAGGAGACACAAGTTCCTTTTCTCCTAGACCTTCAACAAGTGGAGGAGAGTAGATACTTGTTCGAAGCCAAAATCATTAAAAGGATGGAGATTTTGGTCCTTTCCACTCTTGGATGGAAGATGAACCCGCCAACCCCTCTCTCCTTTCTTGATTACATCACAAGAAGACTTGGATTGAAGGATCATCTCTGCTGGGAGTTCCTCAGAAAGTGCGAAGGCGTTCTTCTCTCTGTCCTTGGAGATTCGAGGTTTATGAGTTATCTACCTTCAGAATTGGCAAGTGCTACAATGATGCACGTTGTCAAAAGCGTGGAGCCTCGTCTAGAAGCTGAATACCAGAGCCAGCTCTTTGGCATTCTCAGAATAGACAAGATGCAGGAGAAGGGTGAGAAGGTGAATGAGTGTGGGAAGGTGATGTTGGAATTGTGGTCAGGGTACGAGGAGCAGGGGAAGCAATGCATGAAACGCAAGTTAGGGTCCATTCCTGGAAGCCCAAACGGCGTGATGGATGTGTCGTTTAGCTGTGAAAGCTCGAATGACTCATGGGCCGTGGCTGCTGCTTCTGTGTCTTCCTCACCGGAACCTTTGTCCAAGAAGAGTAGGACTCAACTACCAAACCCTTCCAACTCAGATTTTCTCGACAGCTAG 1101 0.4932 MAYHHHDTLYCSEEHWVGEDEFEQAEDEYSDYHLSTNSSTIINYSPESPHLLLESDMFWDEQELTSLLGKEQHNPLSTCLQTNPNPALEGARREAVEWMLKVNAHFSFSALTAVLAVNYFDRFLFSFRFQNDKPWMTHLAAVSCLSLAAKVEETQVPFLLDLQQVEESRYLFEAKIIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDHLCWEFLRKCEGVLLSVLGDSRFMSYLPSELASATMMHVVKSVEPRLEAEYQSQLFGILRIDKMQEKGEKVNECGKVMLELWSGYEEQGKQCMKRKLGSIPGSPNGVMDVSFSCESSNDSWAVAAASVSSSPEPLSKKSRTQLPNPSNSDFLDS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00365 366 Pfam Cyclin, C-terminal domain 195 324 IPR004367 -
Pumo10g00365 366 Pfam Cyclin, N-terminal domain 73 193 IPR006671 -
Pumo10g00365 366 PANTHER CYCLINS 67 291 IPR039361 -
Pumo10g00365 366 Gene3D - 70 274 - -
Pumo10g00365 366 CDD CYCLIN_AtCycD-like_rpt1 91 190 - -
Pumo10g00365 366 SMART cyclin_7 97 186 IPR013763 -
Pumo10g00365 366 FunFam CYCLIN D32 194 288 - -
Pumo10g00365 366 MobiDBLite consensus disorder prediction 337 366 - -
Pumo10g00365 366 FunFam D3-type cyclin 85 193 - -
Pumo10g00365 366 ProSitePatterns Cyclins signature. 92 123 IPR006671 -
Pumo10g00365 366 SUPERFAMILY Cyclin-like 58 193 IPR036915 -
Pumo10g00365 366 SMART Cyclin_C_2 195 328 IPR004367 -
Pumo10g00365 366 Gene3D - 76 193 - -
Pumo10g00365 366 CDD CYCLIN_AtCycD-like_rpt2 196 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00365 Pumo-Chr10 4819614 4821734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00365 7 308 Core Cell Cycle Gene Families AT4G34160 48.525 1.04e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00365 K14505 - gmx:100811122 523.857