Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00361 ATGGATCGGATAAAAGGGCCATGGAGTCCTGAAGAGGATGAAGCGTTACGGAGGTTGGTTCAGACTTACGGGCCTAGGAACTGGTCTGTTATAAGCAAATCCATTCCGGGCCGGTCTGGGAAATCGTGCCGGTTGCGGTGGTGTAACCAGCTGTCGCCGGAGGTGGAGCACCGGCCTTTCACGGAGGAGGAAGACGAAATGATCTTGAAGGCGCATGCCAGGTTCGGGAACAAGTGGGCCACCATCGCTCGCTTCCTCAATGGCCGCACCGACAACGCCATCAAGAACCATTGGAATTCTACCCTCAAGAGGAAATGCTCCGAACCTCTCTCCGACCCTCAGCCTCTGAAAAGATCCGCCACCGTTTCGGGTAGTCCATCAGGATCCGAATTGAGCGATTCGGGTTTACCCTGTTGTTCTTGCAAGGAGCGTAAGCGTGGCCGTTGCGGAAACTGA 456 0.5526 MDRIKGPWSPEEDEALRRLVQTYGPRNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTEEEDEMILKAHARFGNKWATIARFLNGRTDNAIKNHWNSTLKRKCSEPLSDPQPLKRSATVSGSPSGSELSDSGLPCCSCKERKRGRCGN 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00361 151 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Pumo10g00361 151 Gene3D - 4 56 - -
Pumo10g00361 151 MobiDBLite consensus disorder prediction 104 137 - -
Pumo10g00361 151 CDD SANT 7 49 IPR001005 -
Pumo10g00361 151 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Pumo10g00361 151 Pfam Myb-like DNA-binding domain 8 66 - -
Pumo10g00361 151 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Pumo10g00361 151 PANTHER MYB PROTEIN-RELATED 5 118 - -
Pumo10g00361 151 CDD SANT 59 102 IPR001005 -
Pumo10g00361 151 Gene3D - 58 123 - -
Pumo10g00361 151 MobiDBLite consensus disorder prediction 114 134 - -
Pumo10g00361 151 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Pumo10g00361 151 FunFam Transcription factor MYB44 59 105 - -
Pumo10g00361 151 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Pumo10g00361 151 SMART sant 56 104 IPR001005 -
Pumo10g00361 151 SMART sant 4 53 IPR001005 -
Pumo10g00361 151 FunFam MYB transcription factor 5 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00361 Pumo-Chr10 4740648 4741103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00361 2 134 MYB Transcription Factor Family AT5G67300 69.079 2.05e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g00361 Myb_DNA-bind_6 1.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00361 K09422 - gmx:778037 268.855