Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00352 ATGGAGACTCGCGCCGCCGCAAAGAGAAAGGCTAACGCTAACGCTGCCACCGACACCGTAGTCGTTGTCGAAAAACAACACCCCAAAAGGCAGCGTGTTGTGTTGGCTGAACTTCCCAACTTACCAAACCTCATTGTACCCGAAACTCAAAATCTGCGCAAAGAGAAACTGCAATGTCGGAAGAATCCCAATGCAAAGAAACCATCTCTCACAAACAACGCCCATTCTTCCCCCCAGATCGACGAATCTTATGTTTCGGACATCCATGATTATCTTCGTGAAATGGAGATGCAGAAAAGGAGAAGACCAATGAGTGACTACATTGAGAAAGTTCAGAAAATAGTTACACCATCCATGAGAGCAATATTGGTGGATTGGTTAGTAGAGGTAGCTGAAGAGTACAAACTTCTGTCAGAAACTCTTCATCTCTCTGTTTCATACGTTGATAGGTTTTTATCGGTTAATCCTGTGACTAAATTGAGACTTCAGTTGCTTGGTGTTTCGTCCATGCTCATTGCTTCCAAATATGAGGAAATGGACCCACCTGGTGTGGACGAGTTTTGCAGCATCACTGATAACACGTATGACAACGCAGAGGTTGTGAAGATGGAAGCTGACATACTCAAGTCCCTAAAGTTTGAAATGGGAAATCCTACTGTATGCACCTTTCTAAGGAGGTATGCTGGTGTTGCTTCTCATAACCAAGAAACTCCAAATTCGCAGATTGAATTTTTGGGCAGCTATCTTGCTGAGCTAAGTTTGTTGGACTATGATTGTTTAAGATTCTTGCCTTCTATTGTGGCTGCCTCGGTTATATTTCTTGCCAAGTTCATTATCTGGCCTGAAGTGCATCCTTGGACTTCTTTCTTGGGTGAATGCACGGGTTACAAACCAGCCGAGTTGAAACAATGTGTCCTCATCTTGCATGATTTGTATTTGTCAAGAAAGGCAGCGTCCTTCAAAGCTGTTAGGGAGAAATACAAGCAGCAAAAGTTCAAATGCGTGGCAAACCTGCCTTCCCCTCCACATGTACCGAGTTGTTACTTTGAAGACCAGTGA 1059 0.4381 METRAAAKRKANANAATDTVVVVEKQHPKRQRVVLAELPNLPNLIVPETQNLRKEKLQCRKNPNAKKPSLTNNAHSSPQIDESYVSDIHDYLREMEMQKRRRPMSDYIEKVQKIVTPSMRAILVDWLVEVAEEYKLLSETLHLSVSYVDRFLSVNPVTKLRLQLLGVSSMLIASKYEEMDPPGVDEFCSITDNTYDNAEVVKMEADILKSLKFEMGNPTVCTFLRRYAGVASHNQETPNSQIEFLGSYLAELSLLDYDCLRFLPSIVAASVIFLAKFIIWPEVHPWTSFLGECTGYKPAELKQCVLILHDLYLSRKAASFKAVREKYKQQKFKCVANLPSPPHVPSCYFEDQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00352 352 Gene3D - 101 216 - -
Pumo10g00352 352 SMART Cyclin_C_2 218 341 IPR004367 -
Pumo10g00352 352 ProSitePatterns Cyclins signature. 120 151 IPR006671 -
Pumo10g00352 352 SMART cyclin_7 222 310 IPR013763 -
Pumo10g00352 352 SMART cyclin_7 125 209 IPR013763 -
Pumo10g00352 352 Pfam Cyclin, N-terminal domain 87 215 IPR006671 -
Pumo10g00352 352 SUPERFAMILY Cyclin-like 77 215 IPR036915 -
Pumo10g00352 352 SUPERFAMILY Cyclin-like 218 343 IPR036915 -
Pumo10g00352 352 PIRSF Cyclin_A_B_D_E 2 346 IPR046965 GO:0016538|GO:0044772
Pumo10g00352 352 PANTHER CYCLINS 66 335 IPR039361 -
Pumo10g00352 352 MobiDBLite consensus disorder prediction 59 78 - -
Pumo10g00352 352 CDD CYCLIN_AtCycA-like_rpt2 218 332 - -
Pumo10g00352 352 Gene3D - 87 337 - -
Pumo10g00352 352 FunFam Cyclin superfamily protein, putative 215 287 - -
Pumo10g00352 352 Pfam Cyclin, C-terminal domain 218 340 IPR004367 -
Pumo10g00352 352 FunFam G2/mitotic-specific cyclin 103 214 - -
Pumo10g00352 352 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00352 Pumo-Chr10 4636065 4638933 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00352 3 351 Core Cell Cycle Gene Families AT5G43080 55.587 4.33e-132 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00352 K06627 - gmx:547779 593.578