Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00350 ATGCAGACTCGCGCCGCTGCAAAGAGAAAGGCTAACGCTGCTGCCGTAGTCATGGTTGAGAAACTACACCCCAAAAAACAACGGGTTGTCTTGGGTGAACTTCCCAATCTACCAAACCTTATTCTCCCCGAAACTCAACATCCGCGCAAAGAGAAACTCCAATATCGGAAGAATCCCAATGTCAAGAAACCATCTCTCACAAACAACACCCTTTCTTCCCCCCAGATCGACGAACCTTATGTTTCCGACATCGACCAGTATCTTCGTGCAATGGAGATTCAGAGAAAGAGAAGACCAATGTTTAACTACATGGACAGAGTTCAGCACATAGTTACTGCAAACATGAGAGGAATACTGGTGGATTGGTTAGTGGATGTTGCTGTGGAGTATAAGCTTCTCTCCGAAACTCTTCATCTCTCTGTGTCATACATTGATAGGTTTTTATCTGTTAATCCTATGAGCAAATCCAGGCTTCAGTTGCTTGGTGTTTCTTCCATGCTCATTGCTTCGAAATACGAGGAAGTTAATCCACCCCGTGTGGACAAATTCTGCAACATCACTGATAACACTTATGAAAAGACAGAGGTTGTAGAGATGGAAGCTGAGATACTTGAGTCCCTAAATTTTGAAATGGGCAATCCTACTGCAATCACTTTTCTAAGGAGGTTTTTGGTTGTTGCTTCCGAGAACCGAAGAACCCCAAATTTGAAGATTGAATTTTTGAGCTTCTATCTTTCTGAGCTAAGTTTGATGGATTATGATTGTATAAGATTCTTGCCTTCTACTGTGGCTGCGTCAGTTATATTTCTTGCTAGGTTTATTATCTCGCCAGAAGTGCATCCTTGGACATCTTCCCTGTGTGAATGCTCGGGTTACAAACCAGTTGAGTTGAAAGAATGTGTCCTTATCTTGCATGATTTGTATTTTTCAAGAAAGGCTGAGTCCTTCAAAGCTGTTCGGGAGAAATACAAGCAACCCAAGTTCAAATACGTGGCAAACCTGCCTTCCCCTCCATTTGTACCAAGTTATTACTTTGAAGATCAGTGA 1047 0.4231 MQTRAAAKRKANAAAVVMVEKLHPKKQRVVLGELPNLPNLILPETQHPRKEKLQYRKNPNVKKPSLTNNTLSSPQIDEPYVSDIDQYLRAMEIQRKRRPMFNYMDRVQHIVTANMRGILVDWLVDVAVEYKLLSETLHLSVSYIDRFLSVNPMSKSRLQLLGVSSMLIASKYEEVNPPRVDKFCNITDNTYEKTEVVEMEAEILESLNFEMGNPTAITFLRRFLVVASENRRTPNLKIEFLSFYLSELSLMDYDCIRFLPSTVAASVIFLARFIISPEVHPWTSSLCECSGYKPVELKECVLILHDLYFSRKAESFKAVREKYKQPKFKYVANLPSPPFVPSYYFEDQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00350 348 MobiDBLite consensus disorder prediction 41 72 - -
Pumo10g00350 348 SUPERFAMILY Cyclin-like 73 211 IPR036915 -
Pumo10g00350 348 PIRSF Cyclin_A_B_D_E 2 343 IPR046965 GO:0016538|GO:0044772
Pumo10g00350 348 SMART cyclin_7 121 205 IPR013763 -
Pumo10g00350 348 SMART cyclin_7 218 306 IPR013763 -
Pumo10g00350 348 Gene3D - 83 333 - -
Pumo10g00350 348 FunFam Cyclin superfamily protein, putative 211 283 - -
Pumo10g00350 348 FunFam G2/mitotic-specific cyclin 99 210 - -
Pumo10g00350 348 PANTHER CYCLINS 62 325 IPR039361 -
Pumo10g00350 348 Pfam Cyclin, C-terminal domain 214 336 IPR004367 -
Pumo10g00350 348 SMART Cyclin_C_2 214 337 IPR004367 -
Pumo10g00350 348 CDD CYCLIN_AtCycA-like_rpt2 214 328 - -
Pumo10g00350 348 Gene3D - 97 212 - -
Pumo10g00350 348 Pfam Cyclin, N-terminal domain 84 211 IPR006671 -
Pumo10g00350 348 SUPERFAMILY Cyclin-like 214 338 IPR036915 -
Pumo10g00350 348 ProSitePatterns Cyclins signature. 116 147 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00350 Pumo-Chr10 4619829 4622146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00350 3 347 Core Cell Cycle Gene Families AT5G43080 56.069 5.07e-129 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00350 K06627 - gmx:100786875 611.683