Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00349 ATGGAGACTCGCGCCGCCGCAAAGAGAAAGGCAAGCGCTGCCACCGTAGTCGTGGTCGAAAAACAACACCCCAAGAGGCAGCGCGTTGTGTTGGGGGAACTTCCCAATTTGCCAAACCTTATTGTCCCCGCAACTCAAAATCCGCGCAAAGAGAAACTCCAATGTCGGAAGAATCCCAATACGAAGAAACCATCTCCCGCAAACAACACCCTTTCTTCCCCCCAGATTGACGAACCTTATGTTTCCGACATCTATGAGTATCTTCATGCGATGGAGATGCAGAAAAAGAGAAGACCAATGATTGATTACATAAACAAAGTTCAGAAAGAAGTTACGACAACTATGAGGACAATATTGGTGGATTGGTTGGTAGAGGTAGCTGAGGAGTACAAGCTTCTCCCTGATACCCTTCACCTATCTGTTTCTTACATCGATAGGTTTTTGTCGGTTCATCCTGTCAGTAAATCAAGACTTCAGTTGCTGGGTGTTTCATCCATGCTCATTGCTGCTAAGTATGAGGAAGTTGACCCACCCCGCGTTGACGCGTTCTGCAACATCACTGACAACACATACCACAAATCAGAGGTTGTAAAGATGGAAGCTGACATACTCAAGTCCCTAAAGTTTGAAATGGGAAATCCTACTGTAAACACCTTTCTAAGGAGGTTTGCAGATGTTGCTTCTGAGAACCAAAAAACTCCAAATTTGCAGATTGAATTTTTGGTTGGCTACCTTGCTGATCTAAGTTTGTTGGACTATGATTGTTTAAGATTCTTGCCTTCTATTGTGGCTGCATCGTCTATATTTCTTGCCAAGTTTATTATCTGGCCCGAAGAGCATCCTTGGGTAAGTTTATTATTGTTGTGCACAGAGGGGGGGTTAAACACTGGAGAGATCTGTTGTGGATAG 909 0.4422 METRAAAKRKASAATVVVVEKQHPKRQRVVLGELPNLPNLIVPATQNPRKEKLQCRKNPNTKKPSPANNTLSSPQIDEPYVSDIYEYLHAMEMQKKRRPMIDYINKVQKEVTTTMRTILVDWLVEVAEEYKLLPDTLHLSVSYIDRFLSVHPVSKSRLQLLGVSSMLIAAKYEEVDPPRVDAFCNITDNTYHKSEVVKMEADILKSLKFEMGNPTVNTFLRRFADVASENQKTPNLQIEFLVGYLADLSLLDYDCLRFLPSIVAASSIFLAKFIIWPEEHPWVSLLLLCTEGGLNTGEICCG 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00349 302 Pfam Cyclin, N-terminal domain 83 211 IPR006671 -
Pumo10g00349 302 SUPERFAMILY Cyclin-like 73 211 IPR036915 -
Pumo10g00349 302 PANTHER CYCLINS 61 274 IPR039361 -
Pumo10g00349 302 SUPERFAMILY Cyclin-like 191 272 IPR036915 -
Pumo10g00349 302 Pfam Cyclin, C-terminal domain 214 290 IPR004367 -
Pumo10g00349 302 MobiDBLite consensus disorder prediction 40 75 - -
Pumo10g00349 302 Gene3D - 100 206 - -
Pumo10g00349 302 FunFam Cyclin superfamily protein, putative 211 283 - -
Pumo10g00349 302 PIRSF Cyclin_A_B_D_E 1 292 IPR046965 GO:0016538|GO:0044772
Pumo10g00349 302 MobiDBLite consensus disorder prediction 59 75 - -
Pumo10g00349 302 SMART cyclin_7 121 205 IPR013763 -
Pumo10g00349 302 SMART cyclin_7 218 301 IPR013763 -
Pumo10g00349 302 Gene3D - 207 296 - -
Pumo10g00349 302 FunFam G2/mitotic-specific cyclin 99 210 - -
Pumo10g00349 302 ProSitePatterns Cyclins signature. 116 147 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00349 Pumo-Chr10 4614951 4617810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00349 3 286 Core Cell Cycle Gene Families AT5G43080 57.544 7.78e-109 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00349 K06627 - gmx:100787417 500.745