Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00348 ATGGAGACACGCGCCGCAAAGAGAAAGGCCAACCGAGCCCAAAACGAACCCCTCAAAAAACGACGCGTCGTGTTGGGTGAACTTTCCAACTTGCCCAATCTCATCGTTCCTCAACCAAAGAAAACAGCGGTCACTAAGAAGACTCTTGAATCAAACGTCAATGCTCCTATTGTTTCCGACATCTATGACTATCTTCGTACAATAGAGATGGAGAAGCGAAGGCCAATGGTTGATTACATTGAGAAAGTTCAGAAAGAGGTTACAACAATCATGAGAGGAATATTGGTGGATTGGATAGTAGAGGTTGCTGAGGAATACAAGCTTCTCTCTGATACCATTTTTCTCTCTGTTTCATATATCGATAGAGTTTTGTCTATTGCTCCTGTGAGCAAGCCGAGGCTACAGTTACTGGGTATTTCTTCCATGTTCATTGCATCTAAGTATGAGGAAATTAGCCCGCCGCACGTGGAAGAATTCTGCTTTATCACTGACAACACGTATGACAAGGCAGAGGTGGTAAGTATGGAGGCTGACATACTTAAGGCCCTGGATTTTGAATTGGGCAACCCCACTGTTAAGACCTTTTTAAGGAGGTTTACTGGAATTGCCTGTGAGGATAAAAAGGCTTCAAGTTTGCAATTTGAGTTTATGAGTTATTACCTTGCTGAGCTAAGTTTGTTGGAGTATTATTGTTTGAAGTTCTTACCTTCTTTGGTGGCTGCGTCTGCTGTATTTCTTGCTAGGTTTATCATTTGGCCTGATCTGCAACCTTGGACTTCGACCCTGTATGAATGCTCTCGGTATAAATCAGTTGAATTAAAGGAGTGTGTTCTCGTCTTACATGACTTGTACACGGCAAGGAGGGGAGGGTCTTTCCAAGCTATTCGGGAGAAATACAAACAGCACAAGTTTAAGTACGTAGCAAACCTGCCTGCGCCACAACAAGTACCTAATTATCTATTTGAAGAATGA 972 0.428 METRAAKRKANRAQNEPLKKRRVVLGELSNLPNLIVPQPKKTAVTKKTLESNVNAPIVSDIYDYLRTIEMEKRRPMVDYIEKVQKEVTTIMRGILVDWIVEVAEEYKLLSDTIFLSVSYIDRVLSIAPVSKPRLQLLGISSMFIASKYEEISPPHVEEFCFITDNTYDKAEVVSMEADILKALDFELGNPTVKTFLRRFTGIACEDKKASSLQFEFMSYYLAELSLLEYYCLKFLPSLVAASAVFLARFIIWPDLQPWTSTLYECSRYKSVELKECVLVLHDLYTARRGGSFQAIREKYKQHKFKYVANLPAPQQVPNYLFEE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00348 323 SUPERFAMILY Cyclin-like 55 187 IPR036915 -
Pumo10g00348 323 PIRSF Cyclin_A_B_D_E 1 320 IPR046965 GO:0016538|GO:0044772
Pumo10g00348 323 CDD CYCLIN_AtCycA-like_rpt2 190 304 - -
Pumo10g00348 323 FunFam G2/mitotic-specific cyclin 75 187 - -
Pumo10g00348 323 SUPERFAMILY Cyclin-like 190 315 IPR036915 -
Pumo10g00348 323 Gene3D - 75 188 - -
Pumo10g00348 323 PANTHER CYCLINS 47 301 IPR039361 -
Pumo10g00348 323 FunFam Cyclin superfamily protein, putative 188 259 - -
Pumo10g00348 323 SMART cyclin_7 97 181 IPR013763 -
Pumo10g00348 323 SMART cyclin_7 194 282 IPR013763 -
Pumo10g00348 323 ProSitePatterns Cyclins signature. 92 123 IPR006671 -
Pumo10g00348 323 Gene3D - 60 309 - -
Pumo10g00348 323 Pfam Cyclin, C-terminal domain 190 312 IPR004367 -
Pumo10g00348 323 SMART Cyclin_C_2 190 313 IPR004367 -
Pumo10g00348 323 Pfam Cyclin, N-terminal domain 60 187 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00348 Pumo-Chr10 4602183 4605291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00348 3 323 Core Cell Cycle Gene Families AT5G43080 57.602 1.94e-130 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00348 K06627 - gmx:100776007 565.844