Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00347 ATGGGGAGAGTGAAGCTTCCGATCAAAAAGATTGAGAACACAACAAATAGGCAAGTCACTTTCTCGAAGAGGAGGAATGGGCTCATCAAGAAAGCTTACGAACTTTCTGTTCTTTGTGATGTTGATGTGGCTCTCATCATGTTTTCCCCATCTGGAAGACCCAGTTTCTTCTCTGGCAACAAAAGAATTGAAGAAATTCTAGAACGATATGTTAATCTTCCGGAGGGTGAACACGGAAGCCCAATGACTTCAGATTCCCAAATTGAGGTATTTGTTAACATTGTGTATAATCTGATATATCTATTTCCAGCTTCAATTGATCTTATATGTATTCGACTGATTGTTCTATGCGAGCTTCAGGATCTTCGAAGAGAAATTTTTATTTGCAAGTCTCAATTGGAAGAGATGGAGAAGCGATTAAGGATATTTGAAGGTAATCCTTCAGAGATCACAACGCTTAGCGAGGCTGAATATTGTGAATATGTCCTTCGGGAAACCCTAAAACAAGTGCAACTGCGAAAGTGTGTTTTGGAGGAGTACAACTCTCATGCCTCTCATTCTCCACAGGTACATGCTACAAAAACTGTGAATGTAAATGGATTTGTTACCAGAGCCTCAAAGAACCCGGTAGATTGGTTTCCACAGGGAGATCCACATGTTCAGACTCTGAACTTTGCAAATGTTTATGACACTGCTCCTGTCAGAGATCAACAATCACATAGCACGGTTGTTGATATGTTAACACCAACTTCGACCCTTCTCCATTCTGCAAACATGGTTCAGGATGGTCAAATGAGTTCGAGGAATAGTTTAGAGGTTGGCATTAATAATACATTATTACATCCTCAGTTTGGACAAGCTATTCACACCAATTCCTTCTCTTGGGAGCATCTTCATCCTTTAGAATGGTCCTGCTTCGGTTTCTGGATTGGCTCTATTCTACGTGATACCATGGGATTGCTTGCATGA 969 0.4066 MGRVKLPIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRPSFFSGNKRIEEILERYVNLPEGEHGSPMTSDSQIEVFVNIVYNLIYLFPASIDLICIRLIVLCELQDLRREIFICKSQLEEMEKRLRIFEGNPSEITTLSEAEYCEYVLRETLKQVQLRKCVLEEYNSHASHSPQVHATKTVNVNGFVTRASKNPVDWFPQGDPHVQTLNFANVYDTAPVRDQQSHSTVVDMLTPTSTLLHSANMVQDGQMSSRNSLEVGINNTLLHPQFGQAIHTNSFSWEHLHPLEWSCFGFWIGSILRDTMGLLA 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00347 322 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Pumo10g00347 322 Coils Coil 119 139 - -
Pumo10g00347 322 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Pumo10g00347 322 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Pumo10g00347 322 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pumo10g00347 322 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo10g00347 322 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Pumo10g00347 322 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo10g00347 322 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo10g00347 322 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo10g00347 322 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 203 - -
Pumo10g00347 322 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00347 Pumo-Chr10 4596228 4601555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00347 1 174 Type I MADS-box Gene Family AT1G77980 47.802 2.67e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo10g00347 SRF-TF 7.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00347 - - gmx:100776548 438.728