Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00345 ATGAGTGCTCCGTCGCGAGAAAAGGAGGAGAAAGAGGAGAGGGACGAGGAGGCGAACCGGCTTCTAGAAGAAGAAGAAGAAGAAGAAGGAGATGCATACGAAGCGGGGGAGAAGATCCTGGTGGCGGATTTCGAGTTTGACTCGGTGGACGATGGGAGCGTTCCTCCTTTCTCATGGAAGAAGCTGTGGCTGTTCACTGGGCCTGGGTTCTTGATGAGCATAGCGTTTTTGGATCCGGGGAATCTGGAGGGGGATCTCCAGGCTGGGGCCATCGCGGGCTACTCCCTCCTCTGGCTCTTGATGTGGGCCACCTTCATGGGCCTCTTGATCCAGCTTCTCTCCGCCAGGGTCGGTGTCGCCACGGGCCGCCACCTCGCCGAGCTCTGCAGGGACGAGTACCCCAATTGGGCCCGCCTCGTGCTTTGGTTCATGGCCGAGCTCGCCCTGATTGGCGCTGACATTCAAGAGGTTATTGGAAGTGCCATCGCCATCCAAATTCTCAGCCGAGGCTTCTTCCCTCTCTGGGCTGGAGTTCTAATTACTGCTTCCGATTGCTTTTTCTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATCGCAGTTATGGCTCTTTCTTTTGCCTGGATGTTTGGCGATGCAAAACCTAATCGTAAAGAGCTTTTAATGGGTATTTTGGTTCCAAGACTAAGCTCAAAAACAATTCGTCAGGCTGTGGGCGTTGTGGGTTGTGTCATTATGCCTCACAATGTATTCCTGCATTCTGCTTTGGTGCAGTCAAGGAAGGTTGATCCTAAACAGATAGGTCGGGTACAGGAGGCTCTCAACTACTATTCAATTGAGTCATCGGCTGCACTTACAGTCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCTAAGGGTTTTTATGGAACAAAGCAGGCAGATAGCATAGGATTGGTCAATGCAGGGCAGTATCTTGAAGAAAAGTATGGAGGAGGAGTCTTCCCTATTCTTTATATATGGGGAATTGGGTTATTGGCAGCTGGGCAGAGTAGCACAATCACTGGCACATATGCTGGGCAATTCATAATGGGGGGTTTCCTCAACCTTCGTTTAAAGAAATGGTTGAGAGCATTGATCACTCGAAGTTTTGCAATTGTGCCAACTATAATTGTAGCTATTGTTTTTAATAGATCAGAAGCCTCATTGGATGTTTTGAATGAATGGCTCAATGTGCTTCAGTCCATGCAAATTCCCTTTGCTCTGATTCCCCTCCTCACGTTGGTCTCCAAAGAGCAGATCATGGGGACCTTTAGGGTTGGGCCTGTTGTTGAGAGAGTAGCATGGACTGTTGCTGGACTGATAATAGTAATTAATGGGTATCTCTTGTTAGATTTCTTCGTTTCCGAGGTGAATGGCATCTTGCTTGGTCTTTTAGCCTGCTCCTGCACAACAGCCTATATTGCATTCATTGTATATTTGGTTTCACAGAGCGGTATTCTTCCTTCTGCTTGGGTTAATCGTCTTCCCAAGGGATTTTCTTCTACTGGGAATTAA 1566 0.4783 MSAPSREKEEKEERDEEANRLLEEEEEEEGDAYEAGEKILVADFEFDSVDDGSVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSARVGVATGRHLAELCRDEYPNWARLVLWFMAELALIGADIQEVIGSAIAIQILSRGFFPLWAGVLITASDCFFFLFLENYGVRKLEAAFAVLIAVMALSFAWMFGDAKPNRKELLMGILVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKVDPKQIGRVQEALNYYSIESSAALTVSFMINLFVTTVFAKGFYGTKQADSIGLVNAGQYLEEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTIIVAIVFNRSEASLDVLNEWLNVLQSMQIPFALIPLLTLVSKEQIMGTFRVGPVVERVAWTVAGLIIVINGYLLLDFFVSEVNGILLGLLACSCTTAYIAFIVYLVSQSGILPSAWVNRLPKGFSSTGN 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00345 521 Hamap Divalent metal cation transporter MntH [mntH]. 48 470 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g00345 521 PRINTS Natural resistance-associated macrophage protein signature 171 190 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g00345 521 PRINTS Natural resistance-associated macrophage protein signature 380 397 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g00345 521 PRINTS Natural resistance-associated macrophage protein signature 141 167 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g00345 521 PRINTS Natural resistance-associated macrophage protein signature 414 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g00345 521 PRINTS Natural resistance-associated macrophage protein signature 196 217 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g00345 521 PRINTS Natural resistance-associated macrophage protein signature 245 268 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g00345 521 PRINTS Natural resistance-associated macrophage protein signature 352 371 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g00345 521 MobiDBLite consensus disorder prediction 19 33 - -
Pumo10g00345 521 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 26 499 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g00345 521 Coils Coil 5 31 - -
Pumo10g00345 521 MobiDBLite consensus disorder prediction 1 18 - -
Pumo10g00345 521 MobiDBLite consensus disorder prediction 1 34 - -
Pumo10g00345 521 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 60 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g00345 521 Pfam Natural resistance-associated macrophage protein 83 444 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pumo10g00345 521 NCBIfam Nramp family divalent metal transporter 67 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00345 Pumo-Chr10 4583721 4588166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00345 7 501 Inorganic Solute Cotransporters AT1G47240 79.528 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00345 K21398 - gmx:100791117 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00345 10 4583721 4588166 Pumo10g00345 10 4583721 4588166 ECH