Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00334 ATGAGCTGCAATGGTTGCCGAGTCCTCCGCAAAAGGTGCAGCGAGAGGTGCACCCTCAGGTCCTCCCTCCACTGGATCCATTCCCCCCAAGCCCAAGCCCATGCAACTCTCTTCCTCGCTAAGTTCTTCGGCCGTAGCGACCTCATGTTTTTCATCTCCTCCGTCCCCCTACACAACAGACCCGCGCTGTTTCAGTCTCTACTGTTCGAAGCGTGCGGACGGACTATTAATCCCGTTAACGGTGCCGTCGGACTGCTGTTGAGCGGTAACTGGCACGTGTGTCAGGCCGCCGTCGACACTGTGCTCTCCGGAGGCGTTCTCCTGCCGTTACCGGAGCTTGTTGCGCCGACTTTGGATGAATCGTCGGACAGCATGTTCTCTCAGTCCCAGGCACTAGCATCGGATTCTTTGTTGATGATCGATGAGTCTTTGAGAAGGAGCAGTGATGTAACGGCACCTGTTATGTCGATGGTTTCCGAAGAATCGGTGATGGCAAGCTATGATGTTTGCAGCAGCAGGGACAATGAAAAAAAGCTTTTGAACCTGTTCGTGTAA 555 0.5405 MSCNGCRVLRKRCSERCTLRSSLHWIHSPQAQAHATLFLAKFFGRSDLMFFISSVPLHNRPALFQSLLFEACGRTINPVNGAVGLLLSGNWHVCQAAVDTVLSGGVLLPLPELVAPTLDESSDSMFSQSQALASDSLLMIDESLRRSSDVTAPVMSMVSEESVMASYDVCSSRDNEKKLLNLFV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00334 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 141 - -
Pumo10g00334 184 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Pumo10g00334 184 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00334 Pumo-Chr10 4475098 4475923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00334 1 123 AS2 family AT3G49940 66.667 2.91e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo10g00334 LOB 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00334 - - gmx:100800624 243.047