Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00329 ATGGGACCTCTTGGTGTTGGAGCCTTCCCTGGTGGAGAATGGGATTGCTTTGGAAAAATGTTGGCTAATGAAGCCCGTTATTTCTCGCCACAATTGCTTGGGGAAGATGATGGGAATGTTGGAATGCAATCCATGTTTTGCTCCACTCTTGATGCTGGGGGAAATAAGAGTATGTTTTACTCTTACAACTCTAATTTGCAGTATATTTCTCAAGAAAGCAATCACAATAGCACTTGTAGTGGCCATAGTGTCTTCATGGCCAATCCGGAGGATCATACAAACTACCATTTTGGTTATGTTGATCATGTGCTATCAAATAGTACATCCATGGGTTTTTGCATGATGGATGAGAAAAACCCTGGCTCTTGTGTCCAATCTGACATTGTGATGAAAGAGAATGTCAGCTTGAGTGAAGATGAGAGAAGTGATAAATCAGAGGGTTTTGATCACAGTCAAGTGGAACCTATTGTTTTTCCTGCCAAACATTTGAAGCTCAAAAGGAAGCTTGATGTGCCAGAACTCAAAGTGCATTTAGAAGAGAAAATAAACTCACATGGGAATGGTAACAAAAAACCTCGTGTTTCAAAAGATGTGCAACATTGCATGAAGAACCAGAAACTTGAGAAAAATGGGAATCAGGCTGAAGAGATTAATGCAGGATCAGATCATGGACGTAGTTCTAGTAGTTACACTCAAGAGGATGATAATGCTTCTCAGGCAAACAGTGGAGGAGATACTTCTGCTCTCAACTTAAAAGGGAAAACAAAAGTTAGTAGGGGATCATCAACAGATCCTCAGAGCCTTTATGCAAGGAAAAGAAGAGAAAGAATAAATGAGAGGCTAAGAATTCTGCAGAATCTTGTCCCCAACGGAACAAAGGTTGATATAAGCACTATGCTTGAAGAGGCAGTCCATTATGTGAAATTTTTGCAGCTCCAGATCAAGCTTTTAAGCTCTGATGATATGTGGATGTACGCTCCGATAGCTTATAATGGACTCGACCTCTGTCATGAGAAAATAGAAATTGTCCAAGTGCCACTTAATTGGCGATTTTGTGGAAGCTTGAAGGCATGGAATGGAGTGGTTGAGCAAGAAATGCCTATAATACAAGATTACAAGTAA 1122 0.4029 MGPLGVGAFPGGEWDCFGKMLANEARYFSPQLLGEDDGNVGMQSMFCSTLDAGGNKSMFYSYNSNLQYISQESNHNSTCSGHSVFMANPEDHTNYHFGYVDHVLSNSTSMGFCMMDEKNPGSCVQSDIVMKENVSLSEDERSDKSEGFDHSQVEPIVFPAKHLKLKRKLDVPELKVHLEEKINSHGNGNKKPRVSKDVQHCMKNQKLEKNGNQAEEINAGSDHGRSSSSYTQEDDNASQANSGGDTSALNLKGKTKVSRGSSTDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDMWMYAPIAYNGLDLCHEKIEIVQVPLNWRFCGSLKAWNGVVEQEMPIIQDYK 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00329 373 Pfam Helix-loop-helix DNA-binding domain 271 311 IPR011598 GO:0046983
Pumo10g00329 373 Gene3D - 262 326 IPR036638 GO:0046983
Pumo10g00329 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 310 IPR011598 GO:0046983
Pumo10g00329 373 FunFam Basic helix-loop-helix transcription factor 262 319 - -
Pumo10g00329 373 SMART finulus 267 316 IPR011598 GO:0046983
Pumo10g00329 373 MobiDBLite consensus disorder prediction 206 272 - -
Pumo10g00329 373 MobiDBLite consensus disorder prediction 206 267 - -
Pumo10g00329 373 CDD bHLH_AtIND_like 262 324 - -
Pumo10g00329 373 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 83 333 - -
Pumo10g00329 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 327 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00329 Pumo-Chr10 4410301 4411902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00329 189 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 57.988 6.50e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g00329 HLH 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00329 - - gmx:100779202 515.768