Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00328 ATGTTAAGCAGCACCGTCAATGACGATTCCTTTTCCGCTTTCAGCGACTGCAACAGCGACAGATCCGGCGAATTCCCGACGGCGTCTTCGGAGAGTCGCCGCCTCCTGATCGCGTGCGCCTCCGAGAATTCCGACGAATTAATTCGGCAACTGGTTATCAACCTCGATTCCTGTTCCATTGAGGAGCAAAAACAAGCGACCATGGAAATCAGGTTACTCGCGAAGAACAAGCAAGAGAACCGCCTCAAAATCGCAAAAGCCGGCGCCATTAAGCCCTTGATTTCGCTCTTATCATCAGCAGCAGCAGCAGCATCAGACCTTCAGCTTCAGGAATACGTGGTGACCGCGATTCTGAATCTCTCCCTCTGCGACGAGAACAAAGAGCTTATCGCTTCCTCGGGAGCGGTGAAGCCTCTGGTGGCAGCGCTGGAGACAGGGACAGCCACGGCGAAGGAGAACGCGGCGTGCGCGTTGCTTCGGTTATCGCACAAGGAGGAGCAGAAGGTGGCGATTGGGAGGGCGGGGGCGATTCGGCATCTGGTGAAGCTTCTAGAAGGTGGAGGATTGCGCGGGAAGAAGGACGCGGCGACTGCGCTGTACGCGCTGTGTTCGGCGAAGGAGAACAAGGTGAGGGCGGTGAGGGCGGGGGTTATGAGGCCGCTTGTGGAACTGATGGCGGACTTGGGGTCGAGCATGGTGGATAAGGCGGTGTACGTGGTGAGCGTGGTGGTGTCGGTGGCGGAGGGTCGGGCGGCGCTGGTGGAGGAGGGAGGGATTCCGGTGCTGGTGGAGATAGTGGAGGTGGGGACGCAGAGGCAGAAGGAGATTGCGGTTGGGATTCTGTTGCAGATTTGTGAAGAGAGTGTGGTGTACCGTAGTATGGTGTCCCGCGAAGGAGCGATTCCTCCCTTGGTTGCTTTGTCGCAGTCACACTCCAACCGCGCCAAGCAAAAGGCTGAGAAACTAATAGAGCTTCTACGACAACCAAGATCCGGCAATGCCGCTGGTCGTACCTCGCAAATGTCATCGTAA 1032 0.5717 MLSSTVNDDSFSAFSDCNSDRSGEFPTASSESRRLLIACASENSDELIRQLVINLDSCSIEEQKQATMEIRLLAKNKQENRLKIAKAGAIKPLISLLSSAAAAASDLQLQEYVVTAILNLSLCDENKELIASSGAVKPLVAALETGTATAKENAACALLRLSHKEEQKVAIGRAGAIRHLVKLLEGGGLRGKKDAATALYALCSAKENKVRAVRAGVMRPLVELMADLGSSMVDKAVYVVSVVVSVAEGRAALVEEGGIPVLVEIVEVGTQRQKEIAVGILLQICEESVVYRSMVSREGAIPPLVALSQSHSNRAKQKAEKLIELLRQPRSGNAAGRTSQMSS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00328 343 FunFam RING-type E3 ubiquitin transferase 37 332 - -
Pumo10g00328 343 SUPERFAMILY ARM repeat 44 324 IPR016024 -
Pumo10g00328 343 Gene3D - 193 332 IPR011989 -
Pumo10g00328 343 Gene3D - 24 192 IPR011989 -
Pumo10g00328 343 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 88 135 IPR000225 GO:0005515
Pumo10g00328 343 Pfam Armadillo/beta-catenin-like repeat 165 203 IPR000225 GO:0005515
Pumo10g00328 343 Pfam Armadillo/beta-catenin-like repeat 124 162 IPR000225 GO:0005515
Pumo10g00328 343 Pfam Armadillo/beta-catenin-like repeat 78 121 IPR000225 GO:0005515
Pumo10g00328 343 SMART arm_5 205 245 IPR000225 GO:0005515
Pumo10g00328 343 SMART arm_5 77 122 IPR000225 GO:0005515
Pumo10g00328 343 SMART arm_5 246 286 IPR000225 GO:0005515
Pumo10g00328 343 SMART arm_5 123 163 IPR000225 GO:0005515
Pumo10g00328 343 SMART arm_5 164 204 IPR000225 GO:0005515
Pumo10g00328 343 PANTHER U BOX DOMAIN-CONTAINING 47 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00328 Pumo-Chr10 4404901 4407331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00328 11 337 U-box Gene Family AT2G23140 46.884 1.09e-82 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00328 - - mnt:21388741 486.108