Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00326 ATGGATGATCTTTCGTCCAGCCTTCTGTGCCAAGAAAACGAAACGTGTTTGGAAGAAGGAGGTGAAGAATTAGAATACCAATTCGTTGGATCACAGCATGATTGTGGGGTTTCGGAGGATGAACATGTGGGAATCTTGATTGAGAGAGAGATCGTTCTTGGGTTCAAAAGGGACGAAACTATGGTGTTTGGGGACTGGGTGAAACGTGCACGCATTGACGCAATCAATTGGATTCTCAAAACTAGAGCAACATTGGGTTTTCGCTTCGAAACGGCTTATTTGTCAGTGACATACTTCGATCGATTTCTTTCCAGACGGTCTATTGATAGTGAAAAGAGTTGGGCAATTCGGTTGCTATCAATTGCATGCCTCTCTCTGGCAGCAAAGATGGAGGAGTGCTATGTGCCGGGGCTATCAGAGTTCAGATTGGATGATTATTCCTTTGAGGGAAGAGTGATTCAGAAAATGGAGCTTTTAGTGCTAAGCACATTGGAGTGGAAAATGGGTATCATCACTCCCTTTGATTTTCTCTCCTATTTCATCACAAAGTTCTGCAAAGAATCCCCACCAAGTCCTATTTTTTCCAAGACCATGCAACTCATCTTAACCACAATGAAAGAGGTCAATTTAATGGATCACAAACCATCAGTTATTGCTGCGGCAGCTACTTTGGTGGCAATGGATCAACAATTGACGATAGACGCGGTGGAGTTGAAGATGAGTTCAATTCCACAACATAGGCTTCTAGAACCTAAAGATGTATTTGAGTACTACAATCTAATTCAAAGATTATACGAGGAGAATACCAAAAGCGACACGCATACACCAATTGACATGACAGAAAGCTCTCGAGTTACTTCTTCTGCAGCAATGGCAAAGAGAAGAAGACTCACATTCAGTGATGAAGGAAGTAGTCATGGGAAGGGACCGGGCTAG 936 0.4284 MDDLSSSLLCQENETCLEEGGEELEYQFVGSQHDCGVSEDEHVGILIEREIVLGFKRDETMVFGDWVKRARIDAINWILKTRATLGFRFETAYLSVTYFDRFLSRRSIDSEKSWAIRLLSIACLSLAAKMEECYVPGLSEFRLDDYSFEGRVIQKMELLVLSTLEWKMGIITPFDFLSYFITKFCKESPPSPIFSKTMQLILTTMKEVNLMDHKPSVIAAAATLVAMDQQLTIDAVELKMSSIPQHRLLEPKDVFEYYNLIQRLYEENTKSDTHTPIDMTESSRVTSSAAMAKRRRLTFSDEGSSHGKGPG 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00326 311 PANTHER CYCLINS 45 262 IPR039361 -
Pumo10g00326 311 SMART cyclin_7 76 162 IPR013763 -
Pumo10g00326 311 Gene3D - 68 169 - -
Pumo10g00326 311 CDD CYCLIN_AtCycD-like_rpt1 70 166 - -
Pumo10g00326 311 SUPERFAMILY Cyclin-like 153 243 IPR036915 -
Pumo10g00326 311 CDD CYCLIN_AtCycD-like_rpt2 171 261 - -
Pumo10g00326 311 FunFam Cyclin-D5-1 170 258 - -
Pumo10g00326 311 SMART Cyclin_C_2 171 290 IPR004367 -
Pumo10g00326 311 FunFam Cyclin-D5-1 66 169 - -
Pumo10g00326 311 Gene3D - 170 230 - -
Pumo10g00326 311 Pfam Cyclin, N-terminal domain 68 168 IPR006671 -
Pumo10g00326 311 SUPERFAMILY Cyclin-like 33 168 IPR036915 -
Pumo10g00326 311 MobiDBLite consensus disorder prediction 272 311 - -
Pumo10g00326 311 Pfam Cyclin, C-terminal domain 171 278 IPR004367 -
Pumo10g00326 311 ProSitePatterns Cyclins signature. 71 102 IPR006671 -
Pumo10g00326 311 MobiDBLite consensus disorder prediction 275 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00326 Pumo-Chr10 4383084 4385542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00326 8 221 Core Cell Cycle Gene Families AT4G37630 40.090 2.55e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00326 K18811 - gmx:100780266 570.852