Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00324 ATGGCTCCTACTACTGAGCCTCCTCCAATCAATATTGAACCCGAAAATTGCCCTGAAGCTGTGCTTCAATGGTACAACCTCACATCACTACAAGATTACAAGCGCCAACAACGTGCATTAAGCAGGAACCTCTCTTTACAAGCCAAGAAGCATCTTCTTTATCTCGGTTGGAAGTTTTGGCATGCTGATAAGAAAGATAAGTGGGAACTGCGTTACACTTCACCCATCACTGGCAAGAATTACATCTCTCTACGAAGGGCATGCCAAGGTTGCATTCAAGAAGGAGGAAACCCTCAAATTCTTCTTCAACAAAACAACCCTTCACCTTCTGCACCATCAAAGAAACCCAAGAAGAAGAAGAAGAAGAAAAAAACCAGGGCATGCAAGAAAAGACAAAGGGGTCATGATGATCATGAGTCATCAGATTATGAATCATCAGATGATGAGTTAGGAGAAGCCTCTAGTTCTGTGAATGGCAGAAGAGGAAAGGTTTTGCGGTCGACGCGTGATGAGGGTGAGGCAAAAGGTTCCGAGTCTCCACAACAACAGCAACAGCAGCAGCAGCATCGTGGAACAATTATCCCATGGTTGATAGATAACAATGTGGTGGCTTTATATTCCGCTGTATTCTGCCGTGGTGCAAATAACGCGGTCAAGAAAGGGAAGCTATGGCGTAGTGGCATAGCTTGTGATTGTTGTGGCGTCTTTTTCTCTCCCACTCGCTTTGAGGCTCATGCTGGCTGCCACAAGCACAGACCAAACGCTTCCATTTTCTTCGAAGATGGAAGGTCATTGTTGGATTGTCAAAAGGAAGCGTTGAGTTCACAGCAAAACGTGCCTCCTTTAATTTTAATGAAAGAAGGAGAAGAAACGGATCACAAAAGTGAGTATCAAAATGATAGCATTTGTGCCGTTTGTTGTTTTGGTGGTGAACTGGTTTTATGTGATCGATGCCCCTCTTCGTTTCACCTCAGTTGTTTAGGGTTAGAGCATGTTCCTGATGGTGATTGGTTCTGCCCAGCTTGTTGTTGCAAAATATGCAAGCGACCCACATGCACTGAAGATTGTGATGATAATGTGGATGCTAATAGGGTTCTAGTTTGTCTTCAATGTGAGGGAAGATACCATATTGGGTGCTTAAAAGCTCCAGCATATACCGAGATGGGAAAGGAAGAAGACCATGTTGATAATGAGAATTGGTTCTGCAGTGAAGATTGTGAGAAGATATTTCTAAGTCTGCAGAAGCTGGTGGGACAAGCGATTAATGTTGGTGCAGATAATCTAACTTGGACCTTGTTGAAGGCAGTGAAAAGTGATAGCAGTGGAGAATCTGATCTTACATGGGATGAAGTTGAAGGTTTGAGTCAAAACCAAAGCAAGCTTAGTGTGGCTCTTAATGTGTTGCGTGAGTGTTTTGATCCAGTTATTGATGCTTTCTTCGGGAGAGATATGATGGCTGATGTTGTTTTCAGTAGAGGTTCAGAACTCAACCGTTTGAATTTCCGTGGCTTCTATACTGTGGTTCTGGAGAGGGATGAGGAAGTGGTTTCTGTTGCCACTATAAGGATTTTTGGCAAGAGGGTTGCGGAAATACCATTTGTGGCTACCAGGATTCAGTGTAGAAAACAAGGAATGTGTGGCATCTTGATGAATGAGATTGAGAAGCAGTTGACTTGCTTGGGAGTAGAGGAGATTGTTTTGCCTTCCTCGCGTAATGTCATAGACACTTGGACAAACTCATTTGACTTTGTAAGGATGACACGTTCAGTTAAGTCTCAGTTTCTTGATCATGTTTTTCTGAACTTCGAGGATACCATCATGTGCCACAAACCACTGCTGAAACAAACTGTTATGACCTAA 1860 0.4323 MAPTTEPPPINIEPENCPEAVLQWYNLTSLQDYKRQQRALSRNLSLQAKKHLLYLGWKFWHADKKDKWELRYTSPITGKNYISLRRACQGCIQEGGNPQILLQQNNPSPSAPSKKPKKKKKKKKTRACKKRQRGHDDHESSDYESSDDELGEASSSVNGRRGKVLRSTRDEGEAKGSESPQQQQQQQQHRGTIIPWLIDNNVVALYSAVFCRGANNAVKKGKLWRSGIACDCCGVFFSPTRFEAHAGCHKHRPNASIFFEDGRSLLDCQKEALSSQQNVPPLILMKEGEETDHKSEYQNDSICAVCCFGGELVLCDRCPSSFHLSCLGLEHVPDGDWFCPACCCKICKRPTCTEDCDDNVDANRVLVCLQCEGRYHIGCLKAPAYTEMGKEEDHVDNENWFCSEDCEKIFLSLQKLVGQAINVGADNLTWTLLKAVKSDSSGESDLTWDEVEGLSQNQSKLSVALNVLRECFDPVIDAFFGRDMMADVVFSRGSELNRLNFRGFYTVVLERDEEVVSVATIRIFGKRVAEIPFVATRIQCRKQGMCGILMNEIEKQLTCLGVEEIVLPSSRNVIDTWTNSFDFVRMTRSVKSQFLDHVFLNFEDTIMCHKPLLKQTVMT 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00324 619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 409 IPR013083 -
Pumo10g00324 619 PANTHER PHD FINGER PROTEIN 12 19 615 IPR042163 GO:0003714|GO:0045892
Pumo10g00324 619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 344 IPR013083 -
Pumo10g00324 619 MobiDBLite consensus disorder prediction 113 131 - -
Pumo10g00324 619 SUPERFAMILY FYVE/PHD zinc finger 283 346 IPR011011 -
Pumo10g00324 619 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 449 605 IPR000182 GO:0016747
Pumo10g00324 619 SMART PHD_3 344 406 IPR001965 -
Pumo10g00324 619 SMART PHD_3 302 343 IPR001965 -
Pumo10g00324 619 MobiDBLite consensus disorder prediction 98 112 - -
Pumo10g00324 619 Pfam Tify domain binding domain 221 272 IPR032308 -
Pumo10g00324 619 ProSiteProfiles Zinc finger PHD-type profile. 300 345 IPR019787 -
Pumo10g00324 619 CDD NAT_SF 507 567 - -
Pumo10g00324 619 MobiDBLite consensus disorder prediction 98 190 - -
Pumo10g00324 619 Gene3D - 450 598 - -
Pumo10g00324 619 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 492 570 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00324 Pumo-Chr10 4356735 4358594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00324 161 560 PHD Transcription Factor Family AT5G58610 42.611 4.15e-98 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00324 - - gmx:102668789 870.537