Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00309 ATGGTAGAAACCACCATGAAGAGTTGTAACGTTTTGGATCTCAAAACGTTAATTGAAGAGCTTGAGTCATCAATTGAAGTCCCTTCGGTTTTTATCTGCCCAATTTCACTAGAGCCAATGCGAGACCCGGTGACCCTTTGCACGGGACAAACCTACGACCGCTCCAACATCCTCAAATGGTTCTCCCTTGGTCACAACACGTGTCCCACAACAATGCAAGAGCTTTGGGATGACTCAGTCACGCCAAACACCACACTCTATCACTTCATCCTCTCATGGTTCTCGCAAAAGTACACGGCCATGAAAAAGAAGCTTGAGGACGTGCAAGGCACAGCTTTGGAGCTCTTGGACACGCTGAAAAAGGTGAAAGGTCAAAACAGAGTTCGTGCTCTCAAACAACTTCGCCAACTTGTTGATTCCCACGTGTCCACAAGGAAAACCATTGAGGAAAATAATGGCCCTTCTTTGATTTCTTCCTTGTTGGGTCCTTTCACTTCCCACGCTGTTGGGTCGGAAGTTATTGGGATTCTCGTGAATTTGGAGTTGGGTTCGGAGTTGAAGAGGAATCTCATGCACCCCGCGAAGGTGTCCTTGTTGGTGGACATCATGAATGAGGGAACAATTCAGACAAAGATGAATTGTGCCAAGTTGATTCAAATGTTGTTGGTGGAAGGTAACCCCTCCGAGACAGTCGTTTTATCAAGTTTGAGTCTTTTGGTTGGGGTGTTAAGGTTAGTGAGAGATAAGAAACATCCAACTAGTGTTTTAACTGGACTCATATTACTTAAAATTGTATGTTCGCGTGAATCGGTTAGAAGCTCAATTATAAACATAGGAGCGGTGCCTCAATTGATTCAGCTTTTACCCACTTTGAATAACGAGTGTTTGGAGATAGCACTTCATATTCTTGAAGTTTTGTCAACGCTTCCTGAGGGAAGATTGGCTTTGAAAGAGTGTCCAAATATTATTCCCAACGTGGTCAAGTTGTTGATGAGAGTGTCCGAAAGTTGCACACAATTTGCATTGTCAATATTGTGGGCTATTTACAAGCTTGCCCCAGAGGAATGTGCTTCCAAAGCTGTGGAGGCAGGGTTGGCGGCGAAGCTACTTCTAGTGATTCAGAGTGGTTGCAACCCCGTGTTGAAGCAGAAATCTGCTGAGTTTTTGAAAATGTGCAGTTTAGATTACTCTACTAGTATCTTGATTTCCAAATGTATGCTTACTGCAACAATACAATGA 1239 0.4374 MVETTMKSCNVLDLKTLIEELESSIEVPSVFICPISLEPMRDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSVTPNTTLYHFILSWFSQKYTAMKKKLEDVQGTALELLDTLKKVKGQNRVRALKQLRQLVDSHVSTRKTIEENNGPSLISSLLGPFTSHAVGSEVIGILVNLELGSELKRNLMHPAKVSLLVDIMNEGTIQTKMNCAKLIQMLLVEGNPSETVVLSSLSLLVGVLRLVRDKKHPTSVLTGLILLKIVCSRESVRSSIINIGAVPQLIQLLPTLNNECLEIALHILEVLSTLPEGRLALKECPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSTSILISKCMLTATIQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00309 412 SUPERFAMILY RING/U-box 24 97 - -
Pumo10g00309 412 Gene3D - 261 411 IPR011989 -
Pumo10g00309 412 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Pumo10g00309 412 PANTHER WDSAM1 PROTEIN 24 399 IPR045185 GO:0061630
Pumo10g00309 412 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Pumo10g00309 412 CDD RING-Ubox_PUB 28 80 IPR045210 -
Pumo10g00309 412 Pfam U-box domain 27 97 IPR003613 GO:0004842|GO:0016567
Pumo10g00309 412 SUPERFAMILY ARM repeat 104 392 IPR016024 -
Pumo10g00309 412 Gene3D - 107 260 IPR011989 -
Pumo10g00309 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 106 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00309 Pumo-Chr10 4199130 4200583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00309 12 412 U-box Gene Family AT3G49810 63.092 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00309 - - gmx:100808281 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00309 10 4199130 4200583 Pumo10g00309 10 4199130 4200583 ECH