Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00300 ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGGGGCATTTCTCGCGACACCACCGAAGACGTTCTCAAACTCCACTTCGCCAAATACGGCATCGTTTCGGACTCCACAATCTCCGTAGACCGCACCACCCGAAGCCCTAGAGGTTTCGGCTTCGTCACGTTCTCCGATCTCTCCGCAGCTGATAAAGCCCTCCAAGACACCCACGTCATCCTCGGAAGAACGGTAGAAGTGAAAAAAGCAATTCCCAGGAGTGAACAACATCAACACCAAAACCAATTACAGAGTAGAGGGGGAGGTTATTATAATACTAGTAGTGACTGTAGCAGTGACAACAACGTTAGGACTAAAAAGATTTTTGTAGGGGGTTTACCTGCTGGTATATCTGAGGAGGAATTTAAGAAATACTTTGAAAGGTTTGGTCGGATAACCGATGTCGTGGTCATGCAGGACAGTGTAACGCACCGGCCCAGGGGGTTTGGGTTCATCACTTTTGATTCTGAGGAATCAGTTCAAAACGTTATGGTCAAGAGTTTTCATGACTTGAACGGTAGACAGGTGGAGGTGAAGAGGGCTGTTCCCAAAGAGGGGAACCATGGCTATGATGGTTTTAGTAAATTAAGAAACAAGAGTGAAAGAGGAGTACCTAAGAGTTTTCCTCCTTATAGTCCTAGGAACATGCTCCCGGGTTTCGCTCCGTTGCCTTGGTATAGTGGTGATGGGGTATATGCATACGGGTCTAACGTGTATGGTTGCTGGTACCCTGTGGGTGGGTATGGGGGGAATGGATATGCGGTTCCGTCTGATGCTCCTAGGAACTTCTGGTATGGGCCAGTGATGACTGGTCCTCAGGCATGTCAGGTGCCTTATGCTAGTGCTGTTCCGAATGTTGCGTATGTGGGGGGTAGGATTGGAATAGTAGGTAGCGGGGCTGGATCTTGGGGGTACAGTGGCATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAAGCTTTTAATGCCAATGGATTTGTTCCTGGCAATGTGACATCACCTCATGGTGTAAAGCAGGATGTTGTTGACTCTTCAAGTTTGAAAGGAAGCAATGGTGAAATTTCTAGTTGA 1113 0.4717 MNLKMDSDRAKLFVGGISRDTTEDVLKLHFAKYGIVSDSTISVDRTTRSPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQHQHQNQLQSRGGGYYNTSSDCSSDNNVRTKKIFVGGLPAGISEEEFKKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRNKSERGVPKSFPPYSPRNMLPGFAPLPWYSGDGVYAYGSNVYGCWYPVGGYGGNGYAVPSDAPRNFWYGPVMTGPQACQVPYASAVPNVAYVGGRIGIVGSGAGSWGYSGILGSATNLKFDQAFNANGFVPGNVTSPHGVKQDVVDSSSLKGSNGEISS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00300 370 MobiDBLite consensus disorder prediction 199 216 - -
Pumo10g00300 370 MobiDBLite consensus disorder prediction 199 221 - -
Pumo10g00300 370 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 299 - -
Pumo10g00300 370 CDD RRM2_Hrp1p 121 198 - -
Pumo10g00300 370 Gene3D - 116 204 IPR012677 -
Pumo10g00300 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Pumo10g00300 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 188 IPR000504 GO:0003723
Pumo10g00300 370 SMART rrm1_1 11 82 IPR000504 GO:0003723
Pumo10g00300 370 SMART rrm1_1 121 193 IPR000504 GO:0003723
Pumo10g00300 370 Gene3D - 2 113 IPR012677 -
Pumo10g00300 370 MobiDBLite consensus disorder prediction 85 110 - -
Pumo10g00300 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Pumo10g00300 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Pumo10g00300 370 FunFam RNA-binding protein 1 116 206 - -
Pumo10g00300 370 MobiDBLite consensus disorder prediction 90 110 - -
Pumo10g00300 370 SUPERFAMILY RNA-binding domain, RBD 114 204 IPR035979 GO:0003676
Pumo10g00300 370 SUPERFAMILY RNA-binding domain, RBD 6 108 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00300 Pumo-Chr10 4096430 4098664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00300 6 292 Eukaryotic Initiation Factors Gene Family AT3G16380 27.148 7.92e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00300 K14411 - gmx:100816822 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00300 10 4096430 4098664 Pumo10g00300 10 4096430 4098664 ECH