Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00298 ATGTTGTTGGGTCGGGGTCGGTTTCGCCAGAGAAGAGCAGGGGAGACAAACTCGAGAGGTTACTTTCTTAGTTCTAGGTCTTTAGGCACTACGGGATTCAAGAGAGAGATGGGTGGTCTTGAAAATGCATTGGGGATGATTCAATGTGTTTCAGAAATGACAGTTAGTTCTACCGTGTCTATGGCTATGCCTTCAGGCATGGCTAATCCTTTTATTGCTTCTTCTGCTTGGGATCCACTTGTTCAATTGAGTCAAACTTTTGGAGGCTCTCTTATGGTTTCTCATGGTGACTTTGCCAATTCAGCTTACCCTTTTGTTTTGGAAAACCAGGGAATGAACTGTGACTCTCACCTTGTTAAATATACAAGTAACTCAAATTTGGCTGACATGGCCCCTAAGGTTCCCTTCTTTGGCCAAACCGGTTCTTATGATATAGCTAACAAAGGGTATCAGCCAAATCATAATAATCCGAGTAATGAGCCTAGAATAAGAAGGAGTCCAATAAATAATGAGCAATCTCATCACGAAGGTTCAACTTCTGAAGAAGGAGCTGCAACTGGTGAACATAAAAGAAAGCGAGGACTTGACTATAATTCTACTTTCAGTCCAGATATGAATGCAGAGGGGGAAGCAATTAAAGATTATTCTGGGAAGAGCTGTGATGATGTTAAAGAACATTGTGTAAAGAAACCAAAAGAAAATTTTATTCATGTGAGAGCCCGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCGGAAAGGGTAAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCGACAAGATAACGGGTAAAGCGCCAATGCTGGATGAGATTATAAACTATGTGCAATCACTGCAACAGCAGGTTGAGCTTTTGTCCATGAAACTTGCCACTGTAAACCCAGAATTGAATTTTAATCTAGAGCAAATCCACTCCAAAGATTCGCATATTGGACATGGACCTATTGGTGGATATGGTGCTGGCATCAGCTGCACTCACCCATTCCCTTCTGGAAGTTTCCAGGGAGGCATCTTGCCTAGCCCATCAACACAATTCCCTCCTATGCCACAGTCTGTTTTGAACCAAAGCTTCTATGGAAAGAGCTACAATTCCAGTACAACACTTGACAATTCGGGAAACAGGCCAATTCATTAA 1182 0.4239 MLLGRGRFRQRRAGETNSRGYFLSSRSLGTTGFKREMGGLENALGMIQCVSEMTVSSTVSMAMPSGMANPFIASSAWDPLVQLSQTFGGSLMVSHGDFANSAYPFVLENQGMNCDSHLVKYTSNSNLADMAPKVPFFGQTGSYDIANKGYQPNHNNPSNEPRIRRSPINNEQSHHEGSTSEEGAATGEHKRKRGLDYNSTFSPDMNAEGEAIKDYSGKSCDDVKEHCVKKPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCDKITGKAPMLDEIINYVQSLQQQVELLSMKLATVNPELNFNLEQIHSKDSHIGHGPIGGYGAGISCTHPFPSGSFQGGILPSPSTQFPPMPQSVLNQSFYGKSYNSSTTLDNSGNRPIH 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00298 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 244 294 IPR011598 GO:0046983
Pumo10g00298 393 MobiDBLite consensus disorder prediction 145 204 - -
Pumo10g00298 393 CDD bHLH_AtBPE_like 234 319 - -
Pumo10g00298 393 Pfam Helix-loop-helix DNA-binding domain 247 295 IPR011598 GO:0046983
Pumo10g00298 393 SMART finulus 250 300 IPR011598 GO:0046983
Pumo10g00298 393 Gene3D - 241 318 IPR036638 GO:0046983
Pumo10g00298 393 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 154 356 IPR024097 GO:0006355
Pumo10g00298 393 MobiDBLite consensus disorder prediction 167 197 - -
Pumo10g00298 393 FunFam Basic helix-loop-helix transcription factor 241 313 - -
Pumo10g00298 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 313 IPR036638 GO:0046983
Pumo10g00298 393 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00298 Pumo-Chr10 4000023 4006377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00298 68 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 39.571 6.60e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g00298 HLH 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00298 - - gmx:100787749 483.411